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ZNF836 (zinc finger protein 836)

Identity

Alias_symbol (synonym)FLJ16287
Other alias-
HGNC (Hugo) ZNF836
LocusID (NCBI) 162962
Atlas_Id 76436
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52154872 and ends at 52171643 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF836 (19q13.41) / GAPDH (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF836   34333
Cards
Entrez_Gene (NCBI)ZNF836  162962  zinc finger protein 836
Aliases
GeneCards (Weizmann)ZNF836
Ensembl hg19 (Hinxton)ENSG00000196267 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196267 [Gene_View]  chr19:52154872-52171643 [Contig_View]  ZNF836 [Vega]
ICGC DataPortalENSG00000196267
TCGA cBioPortalZNF836
AceView (NCBI)ZNF836
Genatlas (Paris)ZNF836
WikiGenes162962
SOURCE (Princeton)ZNF836
Genetics Home Reference (NIH)ZNF836
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF836  -     chr19:52154872-52171643 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF836  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF836 - 19q13.41 [CytoView hg19]  ZNF836 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF836 [Mapview hg19]  ZNF836 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131308 BC011784 BC049172
RefSeq transcript (Entrez)NM_001102657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF836
Cluster EST : UnigeneHs.631584 [ NCBI ]
CGAP (NCI)Hs.631584
Alternative Splicing GalleryENSG00000196267
Gene ExpressionZNF836 [ NCBI-GEO ]   ZNF836 [ EBI - ARRAY_EXPRESS ]   ZNF836 [ SEEK ]   ZNF836 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF836 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162962
GTEX Portal (Tissue expression)ZNF836
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZNA1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZNA1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZNA1
Splice isoforms : SwissVarQ6ZNA1
PhosPhoSitePlusQ6ZNA1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF836
DMDM Disease mutations162962
Blocks (Seattle)ZNF836
SuperfamilyQ6ZNA1
Human Protein AtlasENSG00000196267
Peptide AtlasQ6ZNA1
IPIIPI00784678   IPI00432556   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZNA1
IntAct (EBI)Q6ZNA1
FunCoupENSG00000196267
BioGRIDZNF836
STRING (EMBL)ZNF836
ZODIACZNF836
Ontologies - Pathways
QuickGOQ6ZNA1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF836
Atlas of Cancer Signalling NetworkZNF836
Wikipedia pathwaysZNF836
Orthology - Evolution
OrthoDB162962
GeneTree (enSembl)ENSG00000196267
Phylogenetic Trees/Animal Genes : TreeFamZNF836
HOVERGENQ6ZNA1
HOGENOMQ6ZNA1
Homologs : HomoloGeneZNF836
Homology/Alignments : Family Browser (UCSC)ZNF836
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF836 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF836
dbVarZNF836
ClinVarZNF836
1000_GenomesZNF836 
Exome Variant ServerZNF836
ExAC (Exome Aggregation Consortium)ZNF836 (select the gene name)
Genetic variants : HAPMAP162962
Genomic Variants (DGV)ZNF836 [DGVbeta]
DECIPHERZNF836 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF836 
Mutations
ICGC Data PortalZNF836 
TCGA Data PortalZNF836 
Broad Tumor PortalZNF836
OASIS PortalZNF836 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF836  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF836
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF836
DgiDB (Drug Gene Interaction Database)ZNF836
DoCM (Curated mutations)ZNF836 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF836 (select a term)
intoGenZNF836
Cancer3DZNF836(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF836
Genetic Testing Registry ZNF836
NextProtQ6ZNA1 [Medical]
TSGene162962
GENETestsZNF836
Target ValidationZNF836
Huge Navigator ZNF836 [HugePedia]
snp3D : Map Gene to Disease162962
BioCentury BCIQZNF836
ClinGenZNF836
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162962
Chemical/Pharm GKB GenePA162410788
Clinical trialZNF836
Miscellaneous
canSAR (ICR)ZNF836 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF836
EVEXZNF836
GoPubMedZNF836
iHOPZNF836
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:29 CEST 2017

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