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ZNF839 (zinc finger protein 839)

Identity

Other aliasC14orf131
HGNC (Hugo) ZNF839
LocusID (NCBI) 55778
Atlas_Id 56920
Location 14q32.31  [Link to chromosome band 14q32]
Location_base_pair Starts at 102317377 and ends at 102343174 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF839   20345
Cards
Entrez_Gene (NCBI)ZNF839  55778  zinc finger protein 839
AliasesC14orf131
GeneCards (Weizmann)ZNF839
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:102317377-102343174 [Contig_View]  ZNF839 [Vega]
TCGA cBioPortalZNF839
AceView (NCBI)ZNF839
Genatlas (Paris)ZNF839
WikiGenes55778
SOURCE (Princeton)ZNF839
Genetics Home Reference (NIH)ZNF839
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF839  -     chr14:102317377-102343174 +  14q32.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF839  -     14q32.31   [Description]    (hg19-Feb_2009)
EnsemblZNF839 - 14q32.31 [CytoView hg19]  ZNF839 - 14q32.31 [CytoView hg38]
Mapping of homologs : NCBIZNF839 [Mapview hg19]  ZNF839 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF155112 AK001994 AK093342 AK125678 AK127821
RefSeq transcript (Entrez)NM_001267827 NM_001267828 NM_018335
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF839
Cluster EST : UnigeneHs.743359 [ NCBI ]
CGAP (NCI)Hs.743359
Gene ExpressionZNF839 [ NCBI-GEO ]   ZNF839 [ EBI - ARRAY_EXPRESS ]   ZNF839 [ SEEK ]   ZNF839 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF839 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55778
GTEX Portal (Tissue expression)ZNF839
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8K0R7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8K0R7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8K0R7
Splice isoforms : SwissVarA8K0R7
PhosPhoSitePlusA8K0R7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DUF4764    Znf_C2H2   
Domain families : Pfam (Sanger)DUF4764 (PF15961)   
Domain families : Pfam (NCBI)pfam15961   
Conserved Domain (NCBI)ZNF839
DMDM Disease mutations55778
Blocks (Seattle)ZNF839
SuperfamilyA8K0R7
Peptide AtlasA8K0R7
IPIIPI00001180   IPI00889528   IPI00981121   IPI00889685   IPI01018252   
Protein Interaction databases
DIP (DOE-UCLA)A8K0R7
IntAct (EBI)A8K0R7
BioGRIDZNF839
STRING (EMBL)ZNF839
ZODIACZNF839
Ontologies - Pathways
QuickGOA8K0R7
Ontology : AmiGOnucleic acid binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  metal ion binding  
NDEx NetworkZNF839
Atlas of Cancer Signalling NetworkZNF839
Wikipedia pathwaysZNF839
Orthology - Evolution
OrthoDB55778
Phylogenetic Trees/Animal Genes : TreeFamZNF839
HOVERGENA8K0R7
HOGENOMA8K0R7
Homologs : HomoloGeneZNF839
Homology/Alignments : Family Browser (UCSC)ZNF839
Gene fusions - Rearrangements
Tumor Fusion PortalZNF839
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF839 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF839
dbVarZNF839
ClinVarZNF839
1000_GenomesZNF839 
Exome Variant ServerZNF839
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP55778
Genomic Variants (DGV)ZNF839 [DGVbeta]
DECIPHERZNF839 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF839 
Mutations
ICGC Data PortalZNF839 
TCGA Data PortalZNF839 
Broad Tumor PortalZNF839
OASIS PortalZNF839 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF839  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF839
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF839
DgiDB (Drug Gene Interaction Database)ZNF839
DoCM (Curated mutations)ZNF839 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF839 (select a term)
intoGenZNF839
Cancer3DZNF839(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF839
MedgenZNF839
Genetic Testing Registry ZNF839
NextProtA8K0R7 [Medical]
TSGene55778
GENETestsZNF839
Target ValidationZNF839
Huge Navigator ZNF839 [HugePedia]
snp3D : Map Gene to Disease55778
BioCentury BCIQZNF839
ClinGenZNF839
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55778
Chemical/Pharm GKB GenePA162410800
Clinical trialZNF839
Miscellaneous
canSAR (ICR)ZNF839 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF839
EVEXZNF839
GoPubMedZNF839
iHOPZNF839
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:42:46 CET 2017

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