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ZNF84 (zinc finger protein 84)

Identity

Alias_nameszinc finger protein 84 (HPF2)
Alias_symbol (synonym)HPF2
Other alias
HGNC (Hugo) ZNF84
LocusID (NCBI) 7637
Atlas_Id 76439
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 133613872 and ends at 133639890 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF84   13159
Cards
Entrez_Gene (NCBI)ZNF84  7637  zinc finger protein 84
AliasesHPF2
GeneCards (Weizmann)ZNF84
Ensembl hg19 (Hinxton)ENSG00000198040 [Gene_View]  chr12:133613872-133639890 [Contig_View]  ZNF84 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198040 [Gene_View]  chr12:133613872-133639890 [Contig_View]  ZNF84 [Vega]
ICGC DataPortalENSG00000198040
TCGA cBioPortalZNF84
AceView (NCBI)ZNF84
Genatlas (Paris)ZNF84
WikiGenes7637
SOURCE (Princeton)ZNF84
Genetics Home Reference (NIH)ZNF84
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF84  -     chr12:133613872-133639890 +  12q24.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF84  -     12q24.33   [Description]    (hg38-Dec_2013)
EnsemblZNF84 - 12q24.33 [CytoView hg19]  ZNF84 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIZNF84 [Mapview hg19]  ZNF84 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA679683 AK054847 AK055603 AK314232 AW665289
RefSeq transcript (Entrez)NM_001127372 NM_001289971 NM_001289972 NM_003428
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_024477 NW_004929387
Consensus coding sequences : CCDS (NCBI)ZNF84
Cluster EST : UnigeneHs.445019 [ NCBI ]
CGAP (NCI)Hs.445019
Alternative Splicing GalleryENSG00000198040
Gene ExpressionZNF84 [ NCBI-GEO ]   ZNF84 [ EBI - ARRAY_EXPRESS ]   ZNF84 [ SEEK ]   ZNF84 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF84 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7637
GTEX Portal (Tissue expression)ZNF84
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51523   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51523  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51523
Splice isoforms : SwissVarP51523
PhosPhoSitePlusP51523
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF84
DMDM Disease mutations7637
Blocks (Seattle)ZNF84
SuperfamilyP51523
Human Protein AtlasENSG00000198040
Peptide AtlasP51523
HPRD15891
IPIIPI00333480   IPI01014722   IPI01015647   IPI01013633   IPI01013979   IPI01011508   IPI01012433   IPI01011012   IPI01009833   
Protein Interaction databases
DIP (DOE-UCLA)P51523
IntAct (EBI)P51523
FunCoupENSG00000198040
BioGRIDZNF84
STRING (EMBL)ZNF84
ZODIACZNF84
Ontologies - Pathways
QuickGOP51523
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF84
Atlas of Cancer Signalling NetworkZNF84
Wikipedia pathwaysZNF84
Orthology - Evolution
OrthoDB7637
GeneTree (enSembl)ENSG00000198040
Phylogenetic Trees/Animal Genes : TreeFamZNF84
HOVERGENP51523
HOGENOMP51523
Homologs : HomoloGeneZNF84
Homology/Alignments : Family Browser (UCSC)ZNF84
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF84 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF84
dbVarZNF84
ClinVarZNF84
1000_GenomesZNF84 
Exome Variant ServerZNF84
ExAC (Exome Aggregation Consortium)ZNF84 (select the gene name)
Genetic variants : HAPMAP7637
Genomic Variants (DGV)ZNF84 [DGVbeta]
DECIPHER (Syndromes)12:133613872-133639890  ENSG00000198040
CONAN: Copy Number AnalysisZNF84 
Mutations
ICGC Data PortalZNF84 
TCGA Data PortalZNF84 
Broad Tumor PortalZNF84
OASIS PortalZNF84 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF84  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF84
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF84
DgiDB (Drug Gene Interaction Database)ZNF84
DoCM (Curated mutations)ZNF84 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF84 (select a term)
intoGenZNF84
Cancer3DZNF84(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF84
Genetic Testing Registry ZNF84
NextProtP51523 [Medical]
TSGene7637
GENETestsZNF84
Huge Navigator ZNF84 [HugePedia]
snp3D : Map Gene to Disease7637
BioCentury BCIQZNF84
ClinGenZNF84
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7637
Chemical/Pharm GKB GenePA37732
Clinical trialZNF84
Miscellaneous
canSAR (ICR)ZNF84 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF84
EVEXZNF84
GoPubMedZNF84
iHOPZNF84
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:02 CET 2017

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