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ZNF841 (zinc finger protein 841)

Identity

Alias_symbol (synonym)LOC284371
Other alias-
HGNC (Hugo) ZNF841
LocusID (NCBI) 284371
Atlas_Id 76440
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52567719 and ends at 52599018 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ADNP (20q13.13) / ZNF841 (19q13.41)PHKB (16q12.1) / ZNF841 (19q13.41)ZNF841 (19q13.41) / ZNF432 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF841   27611
Cards
Entrez_Gene (NCBI)ZNF841  284371  zinc finger protein 841
Aliases
GeneCards (Weizmann)ZNF841
Ensembl hg19 (Hinxton)ENSG00000197608 [Gene_View]  chr19:52567719-52599018 [Contig_View]  ZNF841 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197608 [Gene_View]  chr19:52567719-52599018 [Contig_View]  ZNF841 [Vega]
ICGC DataPortalENSG00000197608
TCGA cBioPortalZNF841
AceView (NCBI)ZNF841
Genatlas (Paris)ZNF841
WikiGenes284371
SOURCE (Princeton)ZNF841
Genetics Home Reference (NIH)ZNF841
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF841  -     chr19:52567719-52599018 -  19q13.41   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF841  -     19q13.41   [Description]    (hg38-Dec_2013)
EnsemblZNF841 - 19q13.41 [CytoView hg19]  ZNF841 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF841 [Mapview hg19]  ZNF841 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093512 AK094953 AK129938 AK131334 AK131409
RefSeq transcript (Entrez)NM_001136499
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ZNF841
Cluster EST : UnigeneHs.665751 [ NCBI ]
CGAP (NCI)Hs.665751
Alternative Splicing GalleryENSG00000197608
Gene ExpressionZNF841 [ NCBI-GEO ]   ZNF841 [ EBI - ARRAY_EXPRESS ]   ZNF841 [ SEEK ]   ZNF841 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF841 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284371
GTEX Portal (Tissue expression)ZNF841
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN19   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN19  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN19
Splice isoforms : SwissVarQ6ZN19
PhosPhoSitePlusQ6ZN19
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF841
DMDM Disease mutations284371
Blocks (Seattle)ZNF841
SuperfamilyQ6ZN19
Human Protein AtlasENSG00000197608
Peptide AtlasQ6ZN19
IPIIPI00941609   IPI00455562   IPI00737801   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN19
IntAct (EBI)Q6ZN19
FunCoupENSG00000197608
BioGRIDZNF841
STRING (EMBL)ZNF841
ZODIACZNF841
Ontologies - Pathways
QuickGOQ6ZN19
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF841
Atlas of Cancer Signalling NetworkZNF841
Wikipedia pathwaysZNF841
Orthology - Evolution
OrthoDB284371
GeneTree (enSembl)ENSG00000197608
Phylogenetic Trees/Animal Genes : TreeFamZNF841
HOVERGENQ6ZN19
HOGENOMQ6ZN19
Homologs : HomoloGeneZNF841
Homology/Alignments : Family Browser (UCSC)ZNF841
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF841 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF841
dbVarZNF841
ClinVarZNF841
1000_GenomesZNF841 
Exome Variant ServerZNF841
ExAC (Exome Aggregation Consortium)ZNF841 (select the gene name)
Genetic variants : HAPMAP284371
Genomic Variants (DGV)ZNF841 [DGVbeta]
DECIPHER (Syndromes)19:52567719-52599018  ENSG00000197608
CONAN: Copy Number AnalysisZNF841 
Mutations
ICGC Data PortalZNF841 
TCGA Data PortalZNF841 
Broad Tumor PortalZNF841
OASIS PortalZNF841 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF841  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF841
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF841
DgiDB (Drug Gene Interaction Database)ZNF841
DoCM (Curated mutations)ZNF841 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF841 (select a term)
intoGenZNF841
Cancer3DZNF841(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF841
Genetic Testing Registry ZNF841
NextProtQ6ZN19 [Medical]
TSGene284371
GENETestsZNF841
Huge Navigator ZNF841 [HugePedia]
snp3D : Map Gene to Disease284371
BioCentury BCIQZNF841
ClinGenZNF841
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284371
Chemical/Pharm GKB GenePA162410839
Clinical trialZNF841
Miscellaneous
canSAR (ICR)ZNF841 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF841
EVEXZNF841
GoPubMedZNF841
iHOPZNF841
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:54:02 CET 2017

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