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ZNF843 (zinc finger protein 843)

Identity

Alias_symbol (synonym)MGC46336
Other alias-
HGNC (Hugo) ZNF843
LocusID (NCBI) 283933
Atlas_Id 76441
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31435564 and ends at 31443027 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GMDS (6p25.3) / ZNF843 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF843   28710
Cards
Entrez_Gene (NCBI)ZNF843  283933  zinc finger protein 843
Aliases
GeneCards (Weizmann)ZNF843
Ensembl hg19 (Hinxton)ENSG00000176723 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176723 [Gene_View]  chr16:31435564-31443027 [Contig_View]  ZNF843 [Vega]
ICGC DataPortalENSG00000176723
TCGA cBioPortalZNF843
AceView (NCBI)ZNF843
Genatlas (Paris)ZNF843
WikiGenes283933
SOURCE (Princeton)ZNF843
Genetics Home Reference (NIH)ZNF843
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF843  -     chr16:31435564-31443027 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF843  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF843 - 16p11.2 [CytoView hg19]  ZNF843 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF843 [Mapview hg19]  ZNF843 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096248 AK291063 BC036762 JF432874
RefSeq transcript (Entrez)NM_001136509
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF843
Cluster EST : UnigeneHs.722243 [ NCBI ]
CGAP (NCI)Hs.722243
Alternative Splicing GalleryENSG00000176723
Gene ExpressionZNF843 [ NCBI-GEO ]   ZNF843 [ EBI - ARRAY_EXPRESS ]   ZNF843 [ SEEK ]   ZNF843 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF843 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283933
GTEX Portal (Tissue expression)ZNF843
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N446   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N446  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N446
Splice isoforms : SwissVarQ8N446
PhosPhoSitePlusQ8N446
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNF843
DMDM Disease mutations283933
Blocks (Seattle)ZNF843
SuperfamilyQ8N446
Human Protein AtlasENSG00000176723
Peptide AtlasQ8N446
IPIIPI00166631   
Protein Interaction databases
DIP (DOE-UCLA)Q8N446
IntAct (EBI)Q8N446
FunCoupENSG00000176723
BioGRIDZNF843
STRING (EMBL)ZNF843
ZODIACZNF843
Ontologies - Pathways
QuickGOQ8N446
Ontology : AmiGOnucleic acid binding  protein binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  protein binding  metal ion binding  
NDEx NetworkZNF843
Atlas of Cancer Signalling NetworkZNF843
Wikipedia pathwaysZNF843
Orthology - Evolution
OrthoDB283933
GeneTree (enSembl)ENSG00000176723
Phylogenetic Trees/Animal Genes : TreeFamZNF843
HOVERGENQ8N446
HOGENOMQ8N446
Homologs : HomoloGeneZNF843
Homology/Alignments : Family Browser (UCSC)ZNF843
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF843 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF843
dbVarZNF843
ClinVarZNF843
1000_GenomesZNF843 
Exome Variant ServerZNF843
ExAC (Exome Aggregation Consortium)ZNF843 (select the gene name)
Genetic variants : HAPMAP283933
Genomic Variants (DGV)ZNF843 [DGVbeta]
DECIPHERZNF843 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF843 
Mutations
ICGC Data PortalZNF843 
TCGA Data PortalZNF843 
Broad Tumor PortalZNF843
OASIS PortalZNF843 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF843  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF843
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF843
DgiDB (Drug Gene Interaction Database)ZNF843
DoCM (Curated mutations)ZNF843 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF843 (select a term)
intoGenZNF843
Cancer3DZNF843(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF843
Genetic Testing Registry ZNF843
NextProtQ8N446 [Medical]
TSGene283933
GENETestsZNF843
Target ValidationZNF843
Huge Navigator ZNF843 [HugePedia]
snp3D : Map Gene to Disease283933
BioCentury BCIQZNF843
ClinGenZNF843
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283933
Chemical/Pharm GKB GenePA162410853
Clinical trialZNF843
Miscellaneous
canSAR (ICR)ZNF843 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF843
EVEXZNF843
GoPubMedZNF843
iHOPZNF843
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:51:30 CEST 2017

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