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ZNF844 (zinc finger protein 844)

Identity

Alias_symbol (synonym)FLJ14959
Other alias-
HGNC (Hugo) ZNF844
LocusID (NCBI) 284391
Atlas_Id 76442
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12064699 and ends at 12077816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF844 (19p13.2) / CMSS1 (3q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF844   25932
Cards
Entrez_Gene (NCBI)ZNF844  284391  zinc finger protein 844
Aliases
GeneCards (Weizmann)ZNF844
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:12064699-12077816 [Contig_View]  ZNF844 [Vega]
TCGA cBioPortalZNF844
AceView (NCBI)ZNF844
Genatlas (Paris)ZNF844
WikiGenes284391
SOURCE (Princeton)ZNF844
Genetics Home Reference (NIH)ZNF844
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF844  -     chr19:12064699-12077816 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF844  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF844 - 19p13.2 [CytoView hg19]  ZNF844 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF844 [Mapview hg19]  ZNF844 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027865 AK098117 AK299732 AL832297 BC125185
RefSeq transcript (Entrez)NM_001136501
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF844
Cluster EST : UnigeneHs.646391 [ NCBI ]
CGAP (NCI)Hs.646391
Gene ExpressionZNF844 [ NCBI-GEO ]   ZNF844 [ EBI - ARRAY_EXPRESS ]   ZNF844 [ SEEK ]   ZNF844 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF844 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284391
GTEX Portal (Tissue expression)ZNF844
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ08AG5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ08AG5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ08AG5
Splice isoforms : SwissVarQ08AG5
PhosPhoSitePlusQ08AG5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF844
DMDM Disease mutations284391
Blocks (Seattle)ZNF844
SuperfamilyQ08AG5
Peptide AtlasQ08AG5
IPIIPI00397691   IPI01010730   IPI01010224   IPI01021325   IPI00926289   
Protein Interaction databases
DIP (DOE-UCLA)Q08AG5
IntAct (EBI)Q08AG5
BioGRIDZNF844
STRING (EMBL)ZNF844
ZODIACZNF844
Ontologies - Pathways
QuickGOQ08AG5
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF844
Atlas of Cancer Signalling NetworkZNF844
Wikipedia pathwaysZNF844
Orthology - Evolution
OrthoDB284391
Phylogenetic Trees/Animal Genes : TreeFamZNF844
HOVERGENQ08AG5
HOGENOMQ08AG5
Homologs : HomoloGeneZNF844
Homology/Alignments : Family Browser (UCSC)ZNF844
Gene fusions - Rearrangements
Tumor Fusion PortalZNF844
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF844 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF844
dbVarZNF844
ClinVarZNF844
1000_GenomesZNF844 
Exome Variant ServerZNF844
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP284391
Genomic Variants (DGV)ZNF844 [DGVbeta]
DECIPHERZNF844 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF844 
Mutations
ICGC Data PortalZNF844 
TCGA Data PortalZNF844 
Broad Tumor PortalZNF844
OASIS PortalZNF844 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF844  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF844
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF844
DgiDB (Drug Gene Interaction Database)ZNF844
DoCM (Curated mutations)ZNF844 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF844 (select a term)
intoGenZNF844
Cancer3DZNF844(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF844
MedgenZNF844
Genetic Testing Registry ZNF844
NextProtQ08AG5 [Medical]
TSGene284391
GENETestsZNF844
Target ValidationZNF844
Huge Navigator ZNF844 [HugePedia]
snp3D : Map Gene to Disease284391
BioCentury BCIQZNF844
ClinGenZNF844
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284391
Chemical/Pharm GKB GenePA162410862
Clinical trialZNF844
Miscellaneous
canSAR (ICR)ZNF844 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF844
EVEXZNF844
GoPubMedZNF844
iHOPZNF844
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:06 CET 2017

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