Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF845 (zinc finger protein 845)

Identity

Other alias-
HGNC (Hugo) ZNF845
LocusID (NCBI) 91664
Atlas_Id 76443
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53333719 and ends at 53356119 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF845   25112
Cards
Entrez_Gene (NCBI)ZNF845  91664  zinc finger protein 845
Aliases
GeneCards (Weizmann)ZNF845
Ensembl hg19 (Hinxton)ENSG00000213799 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213799 [Gene_View]  chr19:53333719-53356119 [Contig_View]  ZNF845 [Vega]
ICGC DataPortalENSG00000213799
TCGA cBioPortalZNF845
AceView (NCBI)ZNF845
Genatlas (Paris)ZNF845
WikiGenes91664
SOURCE (Princeton)ZNF845
Genetics Home Reference (NIH)ZNF845
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF845  -     chr19:53333719-53356119 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF845  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF845 - 19q13.42 [CytoView hg19]  ZNF845 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF845 [Mapview hg19]  ZNF845 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096653 AK295079 BC007307 DC400704
RefSeq transcript (Entrez)NM_001321522 NM_001321523 NM_001321524 NM_138374
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF845
Cluster EST : UnigeneHs.720672 [ NCBI ]
CGAP (NCI)Hs.720672
Alternative Splicing GalleryENSG00000213799
Gene ExpressionZNF845 [ NCBI-GEO ]   ZNF845 [ EBI - ARRAY_EXPRESS ]   ZNF845 [ SEEK ]   ZNF845 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF845 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91664
GTEX Portal (Tissue expression)ZNF845
Human Protein AtlasENSG00000213799-ZNF845 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IR2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IR2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IR2
Splice isoforms : SwissVarQ96IR2
PhosPhoSitePlusQ96IR2
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF845
DMDM Disease mutations91664
Blocks (Seattle)ZNF845
SuperfamilyQ96IR2
Human Protein Atlas [tissue]ENSG00000213799-ZNF845 [tissue]
Peptide AtlasQ96IR2
IPIIPI00887037   IPI00874083   IPI01012445   
Protein Interaction databases
DIP (DOE-UCLA)Q96IR2
IntAct (EBI)Q96IR2
FunCoupENSG00000213799
BioGRIDZNF845
STRING (EMBL)ZNF845
ZODIACZNF845
Ontologies - Pathways
QuickGOQ96IR2
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF845
Atlas of Cancer Signalling NetworkZNF845
Wikipedia pathwaysZNF845
Orthology - Evolution
OrthoDB91664
GeneTree (enSembl)ENSG00000213799
Phylogenetic Trees/Animal Genes : TreeFamZNF845
HOVERGENQ96IR2
HOGENOMQ96IR2
Homologs : HomoloGeneZNF845
Homology/Alignments : Family Browser (UCSC)ZNF845
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF845
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF845 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF845
dbVarZNF845
ClinVarZNF845
1000_GenomesZNF845 
Exome Variant ServerZNF845
ExAC (Exome Aggregation Consortium)ENSG00000213799
GNOMAD BrowserENSG00000213799
Genetic variants : HAPMAP91664
Genomic Variants (DGV)ZNF845 [DGVbeta]
DECIPHERZNF845 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF845 
Mutations
ICGC Data PortalZNF845 
TCGA Data PortalZNF845 
Broad Tumor PortalZNF845
OASIS PortalZNF845 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF845  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF845
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF845
DgiDB (Drug Gene Interaction Database)ZNF845
DoCM (Curated mutations)ZNF845 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF845 (select a term)
intoGenZNF845
Cancer3DZNF845(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF845
Genetic Testing Registry ZNF845
NextProtQ96IR2 [Medical]
TSGene91664
GENETestsZNF845
Target ValidationZNF845
Huge Navigator ZNF845 [HugePedia]
snp3D : Map Gene to Disease91664
BioCentury BCIQZNF845
ClinGenZNF845
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91664
Chemical/Pharm GKB GenePA162410863
Clinical trialZNF845
Miscellaneous
canSAR (ICR)ZNF845 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF845
EVEXZNF845
GoPubMedZNF845
iHOPZNF845
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:38:06 CET 2017

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