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ZNF846 (zinc finger protein 846)

Identity

Other alias-
HGNC (Hugo) ZNF846
LocusID (NCBI) 162993
Atlas_Id 76444
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9757475 and ends at 9768734 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF846   27260
Cards
Entrez_Gene (NCBI)ZNF846  162993  zinc finger protein 846
Aliases
GeneCards (Weizmann)ZNF846
Ensembl hg19 (Hinxton)ENSG00000196605 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196605 [Gene_View]  chr19:9757475-9768734 [Contig_View]  ZNF846 [Vega]
ICGC DataPortalENSG00000196605
TCGA cBioPortalZNF846
AceView (NCBI)ZNF846
Genatlas (Paris)ZNF846
WikiGenes162993
SOURCE (Princeton)ZNF846
Genetics Home Reference (NIH)ZNF846
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF846  -     chr19:9757475-9768734 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF846  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF846 - 19p13.2 [CytoView hg19]  ZNF846 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF846 [Mapview hg19]  ZNF846 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097652 AK289536 AK308938 BC037359 BC118576
RefSeq transcript (Entrez)NM_001077624
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF846
Cluster EST : UnigeneHs.665717 [ NCBI ]
CGAP (NCI)Hs.665717
Alternative Splicing GalleryENSG00000196605
Gene ExpressionZNF846 [ NCBI-GEO ]   ZNF846 [ EBI - ARRAY_EXPRESS ]   ZNF846 [ SEEK ]   ZNF846 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF846 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162993
GTEX Portal (Tissue expression)ZNF846
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ147U1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ147U1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ147U1
Splice isoforms : SwissVarQ147U1
PhosPhoSitePlusQ147U1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_BED    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912    pfam13465   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_BED (SM00614)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF846
DMDM Disease mutations162993
Blocks (Seattle)ZNF846
SuperfamilyQ147U1
Human Protein AtlasENSG00000196605
Peptide AtlasQ147U1
IPIIPI00789330   IPI00830003   
Protein Interaction databases
DIP (DOE-UCLA)Q147U1
IntAct (EBI)Q147U1
FunCoupENSG00000196605
BioGRIDZNF846
STRING (EMBL)ZNF846
ZODIACZNF846
Ontologies - Pathways
QuickGOQ147U1
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF846
Atlas of Cancer Signalling NetworkZNF846
Wikipedia pathwaysZNF846
Orthology - Evolution
OrthoDB162993
GeneTree (enSembl)ENSG00000196605
Phylogenetic Trees/Animal Genes : TreeFamZNF846
HOVERGENQ147U1
HOGENOMQ147U1
Homologs : HomoloGeneZNF846
Homology/Alignments : Family Browser (UCSC)ZNF846
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF846 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF846
dbVarZNF846
ClinVarZNF846
1000_GenomesZNF846 
Exome Variant ServerZNF846
ExAC (Exome Aggregation Consortium)ZNF846 (select the gene name)
Genetic variants : HAPMAP162993
Genomic Variants (DGV)ZNF846 [DGVbeta]
DECIPHERZNF846 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF846 
Mutations
ICGC Data PortalZNF846 
TCGA Data PortalZNF846 
Broad Tumor PortalZNF846
OASIS PortalZNF846 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF846  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF846
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF846
DgiDB (Drug Gene Interaction Database)ZNF846
DoCM (Curated mutations)ZNF846 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF846 (select a term)
intoGenZNF846
Cancer3DZNF846(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF846
Genetic Testing Registry ZNF846
NextProtQ147U1 [Medical]
TSGene162993
GENETestsZNF846
Target ValidationZNF846
Huge Navigator ZNF846 [HugePedia]
snp3D : Map Gene to Disease162993
BioCentury BCIQZNF846
ClinGenZNF846
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162993
Chemical/Pharm GKB GenePA162410876
Clinical trialZNF846
Miscellaneous
canSAR (ICR)ZNF846 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF846
EVEXZNF846
GoPubMedZNF846
iHOPZNF846
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:31 CEST 2017

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