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ZNF85 (zinc finger protein 85)

Identity

Alias_nameszinc finger protein 85 (HPF4
Alias_symbol (synonym)HPF4
HTF1
Other alias
HGNC (Hugo) ZNF85
LocusID (NCBI) 7639
Atlas_Id 43560
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 21106059 and ends at 21133503 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF85   13160
Cards
Entrez_Gene (NCBI)ZNF85  7639  zinc finger protein 85
AliasesHPF4; HTF1
GeneCards (Weizmann)ZNF85
Ensembl hg19 (Hinxton)ENSG00000105750 [Gene_View]  chr19:21106059-21133503 [Contig_View]  ZNF85 [Vega]
Ensembl hg38 (Hinxton)ENSG00000105750 [Gene_View]  chr19:21106059-21133503 [Contig_View]  ZNF85 [Vega]
ICGC DataPortalENSG00000105750
TCGA cBioPortalZNF85
AceView (NCBI)ZNF85
Genatlas (Paris)ZNF85
WikiGenes7639
SOURCE (Princeton)ZNF85
Genetics Home Reference (NIH)ZNF85
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF85  -     chr19:21106059-21133503 +  19p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF85  -     19p12   [Description]    (hg38-Dec_2013)
EnsemblZNF85 - 19p12 [CytoView hg19]  ZNF85 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF85 [Mapview hg19]  ZNF85 [Mapview hg38]
OMIM603899   
Gene and transcription
Genbank (Entrez)AI253261 AK308258 BC008688 BC036394 BC047646
RefSeq transcript (Entrez)NM_001256171 NM_001256172 NM_001256173 NM_003429
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_003315962 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZNF85
Cluster EST : UnigeneHs.37138 [ NCBI ]
CGAP (NCI)Hs.37138
Alternative Splicing GalleryENSG00000105750
Gene ExpressionZNF85 [ NCBI-GEO ]   ZNF85 [ EBI - ARRAY_EXPRESS ]   ZNF85 [ SEEK ]   ZNF85 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF85 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7639
GTEX Portal (Tissue expression)ZNF85
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03923   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03923  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03923
Splice isoforms : SwissVarQ03923
PhosPhoSitePlusQ03923
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF85
DMDM Disease mutations7639
Blocks (Seattle)ZNF85
SuperfamilyQ03923
Human Protein AtlasENSG00000105750
Peptide AtlasQ03923
HPRD04875
IPIIPI00333314   IPI00914967   IPI01015696   IPI00432749   
Protein Interaction databases
DIP (DOE-UCLA)Q03923
IntAct (EBI)Q03923
FunCoupENSG00000105750
BioGRIDZNF85
STRING (EMBL)ZNF85
ZODIACZNF85
Ontologies - Pathways
QuickGOQ03923
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  DNA binding  transcription factor activity, sequence-specific DNA binding  transcription corepressor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  negative regulation of nucleic acid-templated transcription  
NDEx NetworkZNF85
Atlas of Cancer Signalling NetworkZNF85
Wikipedia pathwaysZNF85
Orthology - Evolution
OrthoDB7639
GeneTree (enSembl)ENSG00000105750
Phylogenetic Trees/Animal Genes : TreeFamZNF85
HOVERGENQ03923
HOGENOMQ03923
Homologs : HomoloGeneZNF85
Homology/Alignments : Family Browser (UCSC)ZNF85
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF85 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF85
dbVarZNF85
ClinVarZNF85
1000_GenomesZNF85 
Exome Variant ServerZNF85
ExAC (Exome Aggregation Consortium)ZNF85 (select the gene name)
Genetic variants : HAPMAP7639
Genomic Variants (DGV)ZNF85 [DGVbeta]
DECIPHER (Syndromes)19:21106059-21133503  ENSG00000105750
CONAN: Copy Number AnalysisZNF85 
Mutations
ICGC Data PortalZNF85 
TCGA Data PortalZNF85 
Broad Tumor PortalZNF85
OASIS PortalZNF85 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF85  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF85
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF85
DgiDB (Drug Gene Interaction Database)ZNF85
DoCM (Curated mutations)ZNF85 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF85 (select a term)
intoGenZNF85
Cancer3DZNF85(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603899   
Orphanet
MedgenZNF85
Genetic Testing Registry ZNF85
NextProtQ03923 [Medical]
TSGene7639
GENETestsZNF85
Huge Navigator ZNF85 [HugePedia]
snp3D : Map Gene to Disease7639
BioCentury BCIQZNF85
ClinGenZNF85
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7639
Chemical/Pharm GKB GenePA37733
Clinical trialZNF85
Miscellaneous
canSAR (ICR)ZNF85 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF85
EVEXZNF85
GoPubMedZNF85
iHOPZNF85
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:56 CEST 2017

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