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ZNF850 (zinc finger protein 850)

Identity

Alias_namesZNF850P
zinc finger protein 850 pseudogene
zinc finger protein 850 (pseudogene)
Other alias
HGNC (Hugo) ZNF850
LocusID (NCBI) 342892
Atlas_Id 76446
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36743478 and ends at 36772814 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF850   27994
Cards
Entrez_Gene (NCBI)ZNF850  342892  zinc finger protein 850
AliasesZNF850P
GeneCards (Weizmann)ZNF850
Ensembl hg19 (Hinxton)ENSG00000267041 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267041 [Gene_View]  chr19:36743478-36772814 [Contig_View]  ZNF850 [Vega]
ICGC DataPortalENSG00000267041
TCGA cBioPortalZNF850
AceView (NCBI)ZNF850
Genatlas (Paris)ZNF850
WikiGenes342892
SOURCE (Princeton)ZNF850
Genetics Home Reference (NIH)ZNF850
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF850  -     chr19:36743478-36772814 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF850  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF850 - 19q13.12 [CytoView hg19]  ZNF850 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF850 [Mapview hg19]  ZNF850 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW440392 BC052603 BC136266 BC143637 CR627133
RefSeq transcript (Entrez)NM_001193552 NM_001267779
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF850
Cluster EST : UnigeneHs.406307 [ NCBI ]
CGAP (NCI)Hs.406307
Alternative Splicing GalleryENSG00000267041
Gene ExpressionZNF850 [ NCBI-GEO ]   ZNF850 [ EBI - ARRAY_EXPRESS ]   ZNF850 [ SEEK ]   ZNF850 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF850 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342892
GTEX Portal (Tissue expression)ZNF850
Human Protein AtlasENSG00000267041-ZNF850 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MQ14   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MQ14  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MQ14
Splice isoforms : SwissVarA8MQ14
PhosPhoSitePlusA8MQ14
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF850
DMDM Disease mutations342892
Blocks (Seattle)ZNF850
SuperfamilyA8MQ14
Human Protein Atlas [tissue]ENSG00000267041-ZNF850 [tissue]
Peptide AtlasA8MQ14
IPIIPI00247157   
Protein Interaction databases
DIP (DOE-UCLA)A8MQ14
IntAct (EBI)A8MQ14
FunCoupENSG00000267041
BioGRIDZNF850
STRING (EMBL)ZNF850
ZODIACZNF850
Ontologies - Pathways
QuickGOA8MQ14
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF850
Atlas of Cancer Signalling NetworkZNF850
Wikipedia pathwaysZNF850
Orthology - Evolution
OrthoDB342892
GeneTree (enSembl)ENSG00000267041
Phylogenetic Trees/Animal Genes : TreeFamZNF850
HOVERGENA8MQ14
HOGENOMA8MQ14
Homologs : HomoloGeneZNF850
Homology/Alignments : Family Browser (UCSC)ZNF850
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF850
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF850 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF850
dbVarZNF850
ClinVarZNF850
1000_GenomesZNF850 
Exome Variant ServerZNF850
ExAC (Exome Aggregation Consortium)ENSG00000267041
GNOMAD BrowserENSG00000267041
Genetic variants : HAPMAP342892
Genomic Variants (DGV)ZNF850 [DGVbeta]
DECIPHERZNF850 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF850 
Mutations
ICGC Data PortalZNF850 
TCGA Data PortalZNF850 
Broad Tumor PortalZNF850
OASIS PortalZNF850 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF850  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF850
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF850
DgiDB (Drug Gene Interaction Database)ZNF850
DoCM (Curated mutations)ZNF850 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF850 (select a term)
intoGenZNF850
Cancer3DZNF850(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF850
Genetic Testing Registry ZNF850
NextProtA8MQ14 [Medical]
TSGene342892
GENETestsZNF850
Target ValidationZNF850
Huge Navigator ZNF850 [HugePedia]
snp3D : Map Gene to Disease342892
BioCentury BCIQZNF850
ClinGenZNF850
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342892
Chemical/Pharm GKB GenePA165395030
Clinical trialZNF850
Miscellaneous
canSAR (ICR)ZNF850 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF850
EVEXZNF850
GoPubMedZNF850
iHOPZNF850
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:06 CET 2017

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