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ZNF852 (zinc finger protein 852)

Identity

Other alias-
HGNC (Hugo) ZNF852
LocusID (NCBI) 285346
Atlas_Id 76447
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44498970 and ends at 44510640 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF852   27713
Cards
Entrez_Gene (NCBI)ZNF852  285346  zinc finger protein 852
Aliases
GeneCards (Weizmann)ZNF852
Ensembl hg19 (Hinxton)ENSG00000178917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178917 [Gene_View]  chr3:44498970-44510640 [Contig_View]  ZNF852 [Vega]
ICGC DataPortalENSG00000178917
TCGA cBioPortalZNF852
AceView (NCBI)ZNF852
Genatlas (Paris)ZNF852
WikiGenes285346
SOURCE (Princeton)ZNF852
Genetics Home Reference (NIH)ZNF852
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF852  -     chr3:44498970-44510640 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF852  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblZNF852 - 3p21.31 [CytoView hg19]  ZNF852 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF852 [Mapview hg19]  ZNF852 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK131507 AK296954 BC014381 DC398999
RefSeq transcript (Entrez)NM_001287349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF852
Cluster EST : UnigeneHs.648974 [ NCBI ]
CGAP (NCI)Hs.648974
Alternative Splicing GalleryENSG00000178917
Gene ExpressionZNF852 [ NCBI-GEO ]   ZNF852 [ EBI - ARRAY_EXPRESS ]   ZNF852 [ SEEK ]   ZNF852 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF852 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)285346
GTEX Portal (Tissue expression)ZNF852
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMS4
Splice isoforms : SwissVarQ6ZMS4
PhosPhoSitePlusQ6ZMS4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF852
DMDM Disease mutations285346
Blocks (Seattle)ZNF852
SuperfamilyQ6ZMS4
Human Protein AtlasENSG00000178917
Peptide AtlasQ6ZMS4
IPIIPI01012700   IPI00888423   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMS4
IntAct (EBI)Q6ZMS4
FunCoupENSG00000178917
BioGRIDZNF852
STRING (EMBL)ZNF852
ZODIACZNF852
Ontologies - Pathways
QuickGOQ6ZMS4
Ontology : AmiGOnucleic acid binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF852
Atlas of Cancer Signalling NetworkZNF852
Wikipedia pathwaysZNF852
Orthology - Evolution
OrthoDB285346
GeneTree (enSembl)ENSG00000178917
Phylogenetic Trees/Animal Genes : TreeFamZNF852
HOVERGENQ6ZMS4
HOGENOMQ6ZMS4
Homologs : HomoloGeneZNF852
Homology/Alignments : Family Browser (UCSC)ZNF852
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF852 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF852
dbVarZNF852
ClinVarZNF852
1000_GenomesZNF852 
Exome Variant ServerZNF852
ExAC (Exome Aggregation Consortium)ZNF852 (select the gene name)
Genetic variants : HAPMAP285346
Genomic Variants (DGV)ZNF852 [DGVbeta]
DECIPHERZNF852 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF852 
Mutations
ICGC Data PortalZNF852 
TCGA Data PortalZNF852 
Broad Tumor PortalZNF852
OASIS PortalZNF852 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF852  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF852
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF852
DgiDB (Drug Gene Interaction Database)ZNF852
DoCM (Curated mutations)ZNF852 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF852 (select a term)
intoGenZNF852
Cancer3DZNF852(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF852
Genetic Testing Registry ZNF852
NextProtQ6ZMS4 [Medical]
TSGene285346
GENETestsZNF852
Target ValidationZNF852
Huge Navigator ZNF852 [HugePedia]
snp3D : Map Gene to Disease285346
BioCentury BCIQZNF852
ClinGenZNF852
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285346
Chemical/Pharm GKB GenePA162410901
Clinical trialZNF852
Miscellaneous
canSAR (ICR)ZNF852 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF852
EVEXZNF852
GoPubMedZNF852
iHOPZNF852
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:51:32 CEST 2017

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