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ZNF853 (zinc finger protein 853)

Identity

Alias_symbol (synonym)DKFZp434J1015
Other alias-
HGNC (Hugo) ZNF853
LocusID (NCBI) 54753
Atlas_Id 76448
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6615896 and ends at 6624290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SLC38A7 (16q21) / ZNF853 (7p22.1)ZNF853 (7p22.1) / COX6B1 (19q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF853   21767
Cards
Entrez_Gene (NCBI)ZNF853  54753  zinc finger protein 853
Aliases
GeneCards (Weizmann)ZNF853
Ensembl hg19 (Hinxton)ENSG00000236609 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236609 [Gene_View]  chr7:6615896-6624290 [Contig_View]  ZNF853 [Vega]
ICGC DataPortalENSG00000236609
TCGA cBioPortalZNF853
AceView (NCBI)ZNF853
Genatlas (Paris)ZNF853
WikiGenes54753
SOURCE (Princeton)ZNF853
Genetics Home Reference (NIH)ZNF853
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF853  -     chr7:6615896-6624290 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF853  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF853 - 7p22.1 [CytoView hg19]  ZNF853 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF853 [Mapview hg19]  ZNF853 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL133055 AL390175
RefSeq transcript (Entrez)NM_017560
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF853
Cluster EST : UnigeneHs.592170 [ NCBI ]
CGAP (NCI)Hs.592170
Alternative Splicing GalleryENSG00000236609
Gene ExpressionZNF853 [ NCBI-GEO ]   ZNF853 [ EBI - ARRAY_EXPRESS ]   ZNF853 [ SEEK ]   ZNF853 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF853 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54753
GTEX Portal (Tissue expression)ZNF853
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG23   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG23  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG23
Splice isoforms : SwissVarP0CG23
PhosPhoSitePlusP0CG23
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF853
DMDM Disease mutations54753
Blocks (Seattle)ZNF853
SuperfamilyP0CG23
Human Protein AtlasENSG00000236609
Peptide AtlasP0CG23
IPIIPI00888042   
Protein Interaction databases
DIP (DOE-UCLA)P0CG23
IntAct (EBI)P0CG23
FunCoupENSG00000236609
BioGRIDZNF853
STRING (EMBL)ZNF853
ZODIACZNF853
Ontologies - Pathways
QuickGOP0CG23
Ontology : AmiGOnucleic acid binding  metal ion binding  
Ontology : EGO-EBInucleic acid binding  metal ion binding  
NDEx NetworkZNF853
Atlas of Cancer Signalling NetworkZNF853
Wikipedia pathwaysZNF853
Orthology - Evolution
OrthoDB54753
GeneTree (enSembl)ENSG00000236609
Phylogenetic Trees/Animal Genes : TreeFamZNF853
HOVERGENP0CG23
HOGENOMP0CG23
Homologs : HomoloGeneZNF853
Homology/Alignments : Family Browser (UCSC)ZNF853
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF853 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF853
dbVarZNF853
ClinVarZNF853
1000_GenomesZNF853 
Exome Variant ServerZNF853
ExAC (Exome Aggregation Consortium)ZNF853 (select the gene name)
Genetic variants : HAPMAP54753
Genomic Variants (DGV)ZNF853 [DGVbeta]
DECIPHERZNF853 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF853 
Mutations
ICGC Data PortalZNF853 
TCGA Data PortalZNF853 
Broad Tumor PortalZNF853
OASIS PortalZNF853 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF853  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF853
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF853
DgiDB (Drug Gene Interaction Database)ZNF853
DoCM (Curated mutations)ZNF853 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF853 (select a term)
intoGenZNF853
Cancer3DZNF853(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF853
Genetic Testing Registry ZNF853
NextProtP0CG23 [Medical]
TSGene54753
GENETestsZNF853
Target ValidationZNF853
Huge Navigator ZNF853 [HugePedia]
snp3D : Map Gene to Disease54753
BioCentury BCIQZNF853
ClinGenZNF853
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54753
Chemical/Pharm GKB GenePA162410913
Clinical trialZNF853
Miscellaneous
canSAR (ICR)ZNF853 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF853
EVEXZNF853
GoPubMedZNF853
iHOPZNF853
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:27 CEST 2017

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