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ZNF860 (zinc finger protein 860)

Identity

Other alias-
HGNC (Hugo) ZNF860
LocusID (NCBI) 344787
Atlas_Id 76449
Location 3p23  [Link to chromosome band 3p23]
Location_base_pair Starts at 31981774 and ends at 31991736 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF860   34513
Cards
Entrez_Gene (NCBI)ZNF860  344787  zinc finger protein 860
Aliases
GeneCards (Weizmann)ZNF860
Ensembl hg19 (Hinxton)ENSG00000197385 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197385 [Gene_View]  chr3:31981774-31991736 [Contig_View]  ZNF860 [Vega]
ICGC DataPortalENSG00000197385
TCGA cBioPortalZNF860
AceView (NCBI)ZNF860
Genatlas (Paris)ZNF860
WikiGenes344787
SOURCE (Princeton)ZNF860
Genetics Home Reference (NIH)ZNF860
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF860  -     chr3:31981774-31991736 +  3p23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF860  -     3p23   [Description]    (hg19-Feb_2009)
EnsemblZNF860 - 3p23 [CytoView hg19]  ZNF860 - 3p23 [CytoView hg38]
Mapping of homologs : NCBIZNF860 [Mapview hg19]  ZNF860 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK294003 BQ268755
RefSeq transcript (Entrez)NM_001137674
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF860
Cluster EST : UnigeneHs.585139 [ NCBI ]
CGAP (NCI)Hs.585139
Alternative Splicing GalleryENSG00000197385
Gene ExpressionZNF860 [ NCBI-GEO ]   ZNF860 [ EBI - ARRAY_EXPRESS ]   ZNF860 [ SEEK ]   ZNF860 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF860 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344787
GTEX Portal (Tissue expression)ZNF860
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NHJ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NHJ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NHJ4
Splice isoforms : SwissVarA6NHJ4
PhosPhoSitePlusA6NHJ4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF860
DMDM Disease mutations344787
Blocks (Seattle)ZNF860
SuperfamilyA6NHJ4
Human Protein AtlasENSG00000197385
Peptide AtlasA6NHJ4
IPIIPI00455569   
Protein Interaction databases
DIP (DOE-UCLA)A6NHJ4
IntAct (EBI)A6NHJ4
FunCoupENSG00000197385
BioGRIDZNF860
STRING (EMBL)ZNF860
ZODIACZNF860
Ontologies - Pathways
QuickGOA6NHJ4
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF860
Atlas of Cancer Signalling NetworkZNF860
Wikipedia pathwaysZNF860
Orthology - Evolution
OrthoDB344787
GeneTree (enSembl)ENSG00000197385
Phylogenetic Trees/Animal Genes : TreeFamZNF860
HOVERGENA6NHJ4
HOGENOMA6NHJ4
Homologs : HomoloGeneZNF860
Homology/Alignments : Family Browser (UCSC)ZNF860
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF860 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF860
dbVarZNF860
ClinVarZNF860
1000_GenomesZNF860 
Exome Variant ServerZNF860
ExAC (Exome Aggregation Consortium)ZNF860 (select the gene name)
Genetic variants : HAPMAP344787
Genomic Variants (DGV)ZNF860 [DGVbeta]
DECIPHERZNF860 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF860 
Mutations
ICGC Data PortalZNF860 
TCGA Data PortalZNF860 
Broad Tumor PortalZNF860
OASIS PortalZNF860 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF860  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF860
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF860
DgiDB (Drug Gene Interaction Database)ZNF860
DoCM (Curated mutations)ZNF860 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF860 (select a term)
intoGenZNF860
Cancer3DZNF860(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF860
Genetic Testing Registry ZNF860
NextProtA6NHJ4 [Medical]
TSGene344787
GENETestsZNF860
Target ValidationZNF860
Huge Navigator ZNF860 [HugePedia]
snp3D : Map Gene to Disease344787
BioCentury BCIQZNF860
ClinGenZNF860
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344787
Chemical/Pharm GKB GenePA164727773
Clinical trialZNF860
Miscellaneous
canSAR (ICR)ZNF860 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF860
EVEXZNF860
GoPubMedZNF860
iHOPZNF860
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:32 CEST 2017

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