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ZNF876P (zinc finger protein 876, pseudogene)

Identity

Other alias-
HGNC (Hugo) ZNF876P
LocusID (NCBI) 642280
Atlas_Id 76452
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 206399 and ends at 249443 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SYNRG (17q12) / ZNF876P (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF876P   32472
Cards
Entrez_Gene (NCBI)ZNF876P  642280  zinc finger protein 876, pseudogene
Aliases
GeneCards (Weizmann)ZNF876P
Ensembl hg19 (Hinxton)ENSG00000198155 [Gene_View]  chr4:206399-249443 [Contig_View]  ZNF876P [Vega]
Ensembl hg38 (Hinxton)ENSG00000198155 [Gene_View]  chr4:206399-249443 [Contig_View]  ZNF876P [Vega]
ICGC DataPortalENSG00000198155
TCGA cBioPortalZNF876P
AceView (NCBI)ZNF876P
Genatlas (Paris)ZNF876P
WikiGenes642280
SOURCE (Princeton)ZNF876P
Genetics Home Reference (NIH)ZNF876P
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF876P  -     chr4:206399-249443 +  4p16.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF876P  -     4p16.3   [Description]    (hg38-Dec_2013)
EnsemblZNF876P - 4p16.3 [CytoView hg19]  ZNF876P - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIZNF876P [Mapview hg19]  ZNF876P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC028359 BC046475 DB024685
RefSeq transcript (Entrez)NM_001039758
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006051 NW_004929313
Consensus coding sequences : CCDS (NCBI)ZNF876P
Cluster EST : UnigeneHs.673877 [ NCBI ]
CGAP (NCI)Hs.673877
Alternative Splicing GalleryENSG00000198155
Gene ExpressionZNF876P [ NCBI-GEO ]   ZNF876P [ EBI - ARRAY_EXPRESS ]   ZNF876P [ SEEK ]   ZNF876P [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF876P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)642280
GTEX Portal (Tissue expression)ZNF876P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49A33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49A33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49A33
Splice isoforms : SwissVarQ49A33
PhosPhoSitePlusQ49A33
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF876P
DMDM Disease mutations642280
Blocks (Seattle)ZNF876P
SuperfamilyQ49A33
Human Protein AtlasENSG00000198155
Peptide AtlasQ49A33
IPIIPI00890720   
Protein Interaction databases
DIP (DOE-UCLA)Q49A33
IntAct (EBI)Q49A33
FunCoupENSG00000198155
BioGRIDZNF876P
STRING (EMBL)ZNF876P
ZODIACZNF876P
Ontologies - Pathways
QuickGOQ49A33
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF876P
Atlas of Cancer Signalling NetworkZNF876P
Wikipedia pathwaysZNF876P
Orthology - Evolution
OrthoDB642280
GeneTree (enSembl)ENSG00000198155
Phylogenetic Trees/Animal Genes : TreeFamZNF876P
HOVERGENQ49A33
HOGENOMQ49A33
Homologs : HomoloGeneZNF876P
Homology/Alignments : Family Browser (UCSC)ZNF876P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF876P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF876P
dbVarZNF876P
ClinVarZNF876P
1000_GenomesZNF876P 
Exome Variant ServerZNF876P
ExAC (Exome Aggregation Consortium)ZNF876P (select the gene name)
Genetic variants : HAPMAP642280
Genomic Variants (DGV)ZNF876P [DGVbeta]
DECIPHER (Syndromes)4:206399-249443  ENSG00000198155
CONAN: Copy Number AnalysisZNF876P 
Mutations
ICGC Data PortalZNF876P 
TCGA Data PortalZNF876P 
Broad Tumor PortalZNF876P
OASIS PortalZNF876P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF876P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF876P
DgiDB (Drug Gene Interaction Database)ZNF876P
DoCM (Curated mutations)ZNF876P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF876P (select a term)
intoGenZNF876P
Cancer3DZNF876P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF876P
Genetic Testing Registry ZNF876P
NextProtQ49A33 [Medical]
TSGene642280
GENETestsZNF876P
Huge Navigator ZNF876P [HugePedia]
snp3D : Map Gene to Disease642280
BioCentury BCIQZNF876P
ClinGenZNF876P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD642280
Clinical trialZNF876P
Miscellaneous
canSAR (ICR)ZNF876P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF876P
EVEXZNF876P
GoPubMedZNF876P
iHOPZNF876P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:05 CET 2017

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