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ZNF878 (zinc finger protein 878)

Identity

Other alias-
HGNC (Hugo) ZNF878
LocusID (NCBI) 729747
Atlas_Id 76453
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 12043805 and ends at 12052967 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF878   37246
Cards
Entrez_Gene (NCBI)ZNF878  729747  zinc finger protein 878
Aliases
GeneCards (Weizmann)ZNF878
Ensembl hg19 (Hinxton)ENSG00000257446 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257446 [Gene_View]  chr19:12043805-12052967 [Contig_View]  ZNF878 [Vega]
ICGC DataPortalENSG00000257446
TCGA cBioPortalZNF878
AceView (NCBI)ZNF878
Genatlas (Paris)ZNF878
WikiGenes729747
SOURCE (Princeton)ZNF878
Genetics Home Reference (NIH)ZNF878
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF878  -     chr19:12043805-12052967 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF878  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF878 - 19p13.2 [CytoView hg19]  ZNF878 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF878 [Mapview hg19]  ZNF878 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BQ222464 DA007842
RefSeq transcript (Entrez)NM_001080404
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF878
Cluster EST : UnigeneHs.704229 [ NCBI ]
CGAP (NCI)Hs.704229
Alternative Splicing GalleryENSG00000257446
Gene ExpressionZNF878 [ NCBI-GEO ]   ZNF878 [ EBI - ARRAY_EXPRESS ]   ZNF878 [ SEEK ]   ZNF878 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF878 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729747
GTEX Portal (Tissue expression)ZNF878
Human Protein AtlasENSG00000257446-ZNF878 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JN71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JN71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JN71
Splice isoforms : SwissVarC9JN71
PhosPhoSitePlusC9JN71
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF878
DMDM Disease mutations729747
Blocks (Seattle)ZNF878
SuperfamilyC9JN71
Human Protein Atlas [tissue]ENSG00000257446-ZNF878 [tissue]
Peptide AtlasC9JN71
IPIIPI01021080   
Protein Interaction databases
DIP (DOE-UCLA)C9JN71
IntAct (EBI)C9JN71
FunCoupENSG00000257446
BioGRIDZNF878
STRING (EMBL)ZNF878
ZODIACZNF878
Ontologies - Pathways
QuickGOC9JN71
Ontology : AmiGOnucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF878
Atlas of Cancer Signalling NetworkZNF878
Wikipedia pathwaysZNF878
Orthology - Evolution
OrthoDB729747
GeneTree (enSembl)ENSG00000257446
Phylogenetic Trees/Animal Genes : TreeFamZNF878
HOVERGENC9JN71
HOGENOMC9JN71
Homologs : HomoloGeneZNF878
Homology/Alignments : Family Browser (UCSC)ZNF878
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF878
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF878 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF878
dbVarZNF878
ClinVarZNF878
1000_GenomesZNF878 
Exome Variant ServerZNF878
ExAC (Exome Aggregation Consortium)ENSG00000257446
GNOMAD BrowserENSG00000257446
Genetic variants : HAPMAP729747
Genomic Variants (DGV)ZNF878 [DGVbeta]
DECIPHERZNF878 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF878 
Mutations
ICGC Data PortalZNF878 
TCGA Data PortalZNF878 
Broad Tumor PortalZNF878
OASIS PortalZNF878 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF878  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF878
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF878
DgiDB (Drug Gene Interaction Database)ZNF878
DoCM (Curated mutations)ZNF878 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF878 (select a term)
intoGenZNF878
Cancer3DZNF878(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF878
Genetic Testing Registry ZNF878
NextProtC9JN71 [Medical]
TSGene729747
GENETestsZNF878
Target ValidationZNF878
Huge Navigator ZNF878 [HugePedia]
snp3D : Map Gene to Disease729747
BioCentury BCIQZNF878
ClinGenZNF878
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729747
Chemical/Pharm GKB GenePA165395055
Clinical trialZNF878
Miscellaneous
canSAR (ICR)ZNF878 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF878
EVEXZNF878
GoPubMedZNF878
iHOPZNF878
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:08 CET 2017

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