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ZNF879 (zinc finger protein 879)

Identity

Alias_symbol (synonym)DKFZp686E2433
Other alias
HGNC (Hugo) ZNF879
LocusID (NCBI) 345462
Atlas_Id 76454
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179023775 and ends at 179034387 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF879   37273
Cards
Entrez_Gene (NCBI)ZNF879  345462  zinc finger protein 879
AliasesDKFZp686E2433
GeneCards (Weizmann)ZNF879
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:179023775-179034387 [Contig_View]  ZNF879 [Vega]
TCGA cBioPortalZNF879
AceView (NCBI)ZNF879
Genatlas (Paris)ZNF879
WikiGenes345462
SOURCE (Princeton)ZNF879
Genetics Home Reference (NIH)ZNF879
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF879  -     chr5:179023775-179034387 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF879  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblZNF879 - 5q35.3 [CytoView hg19]  ZNF879 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIZNF879 [Mapview hg19]  ZNF879 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300504 BX114675 BX648737 DC350553
RefSeq transcript (Entrez)NM_001136116
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF879
Cluster EST : UnigeneHs.445740 [ NCBI ]
CGAP (NCI)Hs.445740
Gene ExpressionZNF879 [ NCBI-GEO ]   ZNF879 [ EBI - ARRAY_EXPRESS ]   ZNF879 [ SEEK ]   ZNF879 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF879 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)345462
GTEX Portal (Tissue expression)ZNF879
Protein : pattern, domain, 3D structure
UniProt/SwissProtB4DU55   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB4DU55  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB4DU55
Splice isoforms : SwissVarB4DU55
PhosPhoSitePlusB4DU55
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF879
DMDM Disease mutations345462
Blocks (Seattle)ZNF879
SuperfamilyB4DU55
Peptide AtlasB4DU55
IPIIPI00914580   IPI00978439   IPI00973829   IPI00976887   
Protein Interaction databases
DIP (DOE-UCLA)B4DU55
IntAct (EBI)B4DU55
BioGRIDZNF879
STRING (EMBL)ZNF879
ZODIACZNF879
Ontologies - Pathways
QuickGOB4DU55
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF879
Atlas of Cancer Signalling NetworkZNF879
Wikipedia pathwaysZNF879
Orthology - Evolution
OrthoDB345462
Phylogenetic Trees/Animal Genes : TreeFamZNF879
HOVERGENB4DU55
HOGENOMB4DU55
Homologs : HomoloGeneZNF879
Homology/Alignments : Family Browser (UCSC)ZNF879
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF879 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF879
dbVarZNF879
ClinVarZNF879
1000_GenomesZNF879 
Exome Variant ServerZNF879
ExAC (Exome Aggregation Consortium)ZNF879 (select the gene name)
Genetic variants : HAPMAP345462
Genomic Variants (DGV)ZNF879 [DGVbeta]
DECIPHERZNF879 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF879 
Mutations
ICGC Data PortalZNF879 
TCGA Data PortalZNF879 
Broad Tumor PortalZNF879
OASIS PortalZNF879 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF879  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF879
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF879
DgiDB (Drug Gene Interaction Database)ZNF879
DoCM (Curated mutations)ZNF879 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF879 (select a term)
intoGenZNF879
Cancer3DZNF879(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF879
Genetic Testing Registry ZNF879
NextProtB4DU55 [Medical]
TSGene345462
GENETestsZNF879
Target ValidationZNF879
Huge Navigator ZNF879 [HugePedia]
snp3D : Map Gene to Disease345462
BioCentury BCIQZNF879
ClinGenZNF879
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD345462
Chemical/Pharm GKB GenePA165660603
Clinical trialZNF879
Miscellaneous
canSAR (ICR)ZNF879 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF879
EVEXZNF879
GoPubMedZNF879
iHOPZNF879
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:28 CEST 2017

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