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ZNF880 (zinc finger protein 880)

Identity

Other alias-
HGNC (Hugo) ZNF880
LocusID (NCBI) 400713
Atlas_Id 76455
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52369917 and ends at 52385793 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
YME1L1 (10p12.1) / ZNF880 (19q13.41)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF880   37249
Cards
Entrez_Gene (NCBI)ZNF880  400713  zinc finger protein 880
Aliases
GeneCards (Weizmann)ZNF880
Ensembl hg19 (Hinxton)ENSG00000221923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221923 [Gene_View]  chr19:52369917-52385793 [Contig_View]  ZNF880 [Vega]
ICGC DataPortalENSG00000221923
TCGA cBioPortalZNF880
AceView (NCBI)ZNF880
Genatlas (Paris)ZNF880
WikiGenes400713
SOURCE (Princeton)ZNF880
Genetics Home Reference (NIH)ZNF880
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF880  -     chr19:52369917-52385793 +  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF880  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF880 - 19q13.41 [CytoView hg19]  ZNF880 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF880 [Mapview hg19]  ZNF880 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF086165 AF088022 AI754748 AK001357 AK297834
RefSeq transcript (Entrez)NM_001145434
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF880
Cluster EST : UnigeneHs.675463 [ NCBI ]
CGAP (NCI)Hs.675463
Alternative Splicing GalleryENSG00000221923
Gene ExpressionZNF880 [ NCBI-GEO ]   ZNF880 [ EBI - ARRAY_EXPRESS ]   ZNF880 [ SEEK ]   ZNF880 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF880 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400713
GTEX Portal (Tissue expression)ZNF880
Human Protein AtlasENSG00000221923-ZNF880 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PDB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PDB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PDB4
Splice isoforms : SwissVarQ6PDB4
PhosPhoSitePlusQ6PDB4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF880
DMDM Disease mutations400713
Blocks (Seattle)ZNF880
SuperfamilyQ6PDB4
Human Protein Atlas [tissue]ENSG00000221923-ZNF880 [tissue]
Peptide AtlasQ6PDB4
IPIIPI00888415   IPI00794499   IPI01010291   
Protein Interaction databases
DIP (DOE-UCLA)Q6PDB4
IntAct (EBI)Q6PDB4
FunCoupENSG00000221923
BioGRIDZNF880
STRING (EMBL)ZNF880
ZODIACZNF880
Ontologies - Pathways
QuickGOQ6PDB4
Ontology : AmiGOnucleic acid binding  transcription factor activity, sequence-specific DNA binding  intracellular  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  transcription factor activity, sequence-specific DNA binding  intracellular  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF880
Atlas of Cancer Signalling NetworkZNF880
Wikipedia pathwaysZNF880
Orthology - Evolution
OrthoDB400713
GeneTree (enSembl)ENSG00000221923
Phylogenetic Trees/Animal Genes : TreeFamZNF880
HOVERGENQ6PDB4
HOGENOMQ6PDB4
Homologs : HomoloGeneZNF880
Homology/Alignments : Family Browser (UCSC)ZNF880
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF880
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF880 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF880
dbVarZNF880
ClinVarZNF880
1000_GenomesZNF880 
Exome Variant ServerZNF880
ExAC (Exome Aggregation Consortium)ENSG00000221923
GNOMAD BrowserENSG00000221923
Genetic variants : HAPMAP400713
Genomic Variants (DGV)ZNF880 [DGVbeta]
DECIPHERZNF880 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF880 
Mutations
ICGC Data PortalZNF880 
TCGA Data PortalZNF880 
Broad Tumor PortalZNF880
OASIS PortalZNF880 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF880  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF880
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF880
DgiDB (Drug Gene Interaction Database)ZNF880
DoCM (Curated mutations)ZNF880 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF880 (select a term)
intoGenZNF880
Cancer3DZNF880(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF880
Genetic Testing Registry ZNF880
NextProtQ6PDB4 [Medical]
TSGene400713
GENETestsZNF880
Target ValidationZNF880
Huge Navigator ZNF880 [HugePedia]
snp3D : Map Gene to Disease400713
BioCentury BCIQZNF880
ClinGenZNF880
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400713
Chemical/Pharm GKB GenePA165395098
Clinical trialZNF880
Miscellaneous
canSAR (ICR)ZNF880 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF880
EVEXZNF880
GoPubMedZNF880
iHOPZNF880
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:08 CET 2017

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