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ZNF883 (zinc finger protein 883)

Identity

Other alias-
HGNC (Hugo) ZNF883
LocusID (NCBI) 169834
Atlas_Id 76456
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 112997120 and ends at 113012192 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF883   27271
Cards
Entrez_Gene (NCBI)ZNF883  169834  zinc finger protein 883
Aliases
GeneCards (Weizmann)ZNF883
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:112997120-113012192 [Contig_View]  ZNF883 [Vega]
TCGA cBioPortalZNF883
AceView (NCBI)ZNF883
Genatlas (Paris)ZNF883
WikiGenes169834
SOURCE (Princeton)ZNF883
Genetics Home Reference (NIH)ZNF883
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF883  -     chr9:112997120-113012192 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF883  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblZNF883 - 9q32 [CytoView hg19]  ZNF883 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIZNF883 [Mapview hg19]  ZNF883 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095843
RefSeq transcript (Entrez)NM_001101338
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF883
Cluster EST : UnigeneHs.192877 [ NCBI ]
CGAP (NCI)Hs.192877
Gene ExpressionZNF883 [ NCBI-GEO ]   ZNF883 [ EBI - ARRAY_EXPRESS ]   ZNF883 [ SEEK ]   ZNF883 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF883 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169834
GTEX Portal (Tissue expression)ZNF883
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG24
Splice isoforms : SwissVarP0CG24
PhosPhoSitePlusP0CG24
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF883
DMDM Disease mutations169834
Blocks (Seattle)ZNF883
SuperfamilyP0CG24
Peptide AtlasP0CG24
IPIIPI00744276   
Protein Interaction databases
DIP (DOE-UCLA)P0CG24
IntAct (EBI)P0CG24
BioGRIDZNF883
STRING (EMBL)ZNF883
ZODIACZNF883
Ontologies - Pathways
QuickGOP0CG24
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF883
Atlas of Cancer Signalling NetworkZNF883
Wikipedia pathwaysZNF883
Orthology - Evolution
OrthoDB169834
Phylogenetic Trees/Animal Genes : TreeFamZNF883
HOVERGENP0CG24
HOGENOMP0CG24
Homologs : HomoloGeneZNF883
Homology/Alignments : Family Browser (UCSC)ZNF883
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF883
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF883 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF883
dbVarZNF883
ClinVarZNF883
1000_GenomesZNF883 
Exome Variant ServerZNF883
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP169834
Genomic Variants (DGV)ZNF883 [DGVbeta]
DECIPHERZNF883 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF883 
Mutations
ICGC Data PortalZNF883 
TCGA Data PortalZNF883 
Broad Tumor PortalZNF883
OASIS PortalZNF883 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF883
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF883
DgiDB (Drug Gene Interaction Database)ZNF883
DoCM (Curated mutations)ZNF883 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF883 (select a term)
intoGenZNF883
Cancer3DZNF883(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF883
Genetic Testing Registry ZNF883
NextProtP0CG24 [Medical]
TSGene169834
GENETestsZNF883
Target ValidationZNF883
Huge Navigator ZNF883 [HugePedia]
snp3D : Map Gene to Disease169834
BioCentury BCIQZNF883
ClinGenZNF883
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169834
Chemical/Pharm GKB GenePA165586440
Clinical trialZNF883
Miscellaneous
canSAR (ICR)ZNF883 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF883
EVEXZNF883
GoPubMedZNF883
iHOPZNF883
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:08 CET 2017

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