Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF888 (zinc finger protein 888)

Identity

Other alias-
HGNC (Hugo) ZNF888
LocusID (NCBI) 388559
Atlas_Id 77758
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52905893 and ends at 52917931 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF888   38695
Cards
Entrez_Gene (NCBI)ZNF888  388559  zinc finger protein 888
Aliases
GeneCards (Weizmann)ZNF888
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:52905893-52917931 [Contig_View]  ZNF888 [Vega]
TCGA cBioPortalZNF888
AceView (NCBI)ZNF888
Genatlas (Paris)ZNF888
WikiGenes388559
SOURCE (Princeton)ZNF888
Genetics Home Reference (NIH)ZNF888
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF888  -     chr19:52905893-52917931 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF888  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF888 - 19q13.41 [CytoView hg19]  ZNF888 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF888 [Mapview hg19]  ZNF888 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001310127
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF888
Gene ExpressionZNF888 [ NCBI-GEO ]   ZNF888 [ EBI - ARRAY_EXPRESS ]   ZNF888 [ SEEK ]   ZNF888 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF888 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388559
GTEX Portal (Tissue expression)ZNF888
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CJ79   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CJ79  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CJ79
Splice isoforms : SwissVarP0CJ79
PhosPhoSitePlusP0CJ79
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF888
DMDM Disease mutations388559
Blocks (Seattle)ZNF888
SuperfamilyP0CJ79
Peptide AtlasP0CJ79
IPIIPI00964407   IPI01025194   
Protein Interaction databases
DIP (DOE-UCLA)P0CJ79
IntAct (EBI)P0CJ79
BioGRIDZNF888
STRING (EMBL)ZNF888
ZODIACZNF888
Ontologies - Pathways
QuickGOP0CJ79
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF888
Atlas of Cancer Signalling NetworkZNF888
Wikipedia pathwaysZNF888
Orthology - Evolution
OrthoDB388559
Phylogenetic Trees/Animal Genes : TreeFamZNF888
HOVERGENP0CJ79
HOGENOMP0CJ79
Homologs : HomoloGeneZNF888
Homology/Alignments : Family Browser (UCSC)ZNF888
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF888 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF888
dbVarZNF888
ClinVarZNF888
1000_GenomesZNF888 
Exome Variant ServerZNF888
ExAC (Exome Aggregation Consortium)ZNF888 (select the gene name)
Genetic variants : HAPMAP388559
Genomic Variants (DGV)ZNF888 [DGVbeta]
DECIPHERZNF888 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF888 
Mutations
ICGC Data PortalZNF888 
TCGA Data PortalZNF888 
Broad Tumor PortalZNF888
OASIS PortalZNF888 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF888
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF888
DgiDB (Drug Gene Interaction Database)ZNF888
DoCM (Curated mutations)ZNF888 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF888 (select a term)
intoGenZNF888
Cancer3DZNF888(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF888
Genetic Testing Registry ZNF888
NextProtP0CJ79 [Medical]
TSGene388559
GENETestsZNF888
Target ValidationZNF888
Huge Navigator ZNF888 [HugePedia]
snp3D : Map Gene to Disease388559
BioCentury BCIQZNF888
ClinGenZNF888
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388559
Chemical/Pharm GKB GenePA165395136
Clinical trialZNF888
Miscellaneous
canSAR (ICR)ZNF888 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF888
EVEXZNF888
GoPubMedZNF888
iHOPZNF888
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:45:28 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.