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ZNF90 (zinc finger protein 90)

Identity

Alias_nameszinc finger protein 90 (HTF9)
Alias_symbol (synonym)HTF9
Other alias
HGNC (Hugo) ZNF90
LocusID (NCBI) 7643
Atlas_Id 76459
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 20077994 and ends at 20121168 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF90   13165
Cards
Entrez_Gene (NCBI)ZNF90  7643  zinc finger protein 90
AliasesHTF9
GeneCards (Weizmann)ZNF90
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:20077994-20121168 [Contig_View]  ZNF90 [Vega]
TCGA cBioPortalZNF90
AceView (NCBI)ZNF90
Genatlas (Paris)ZNF90
WikiGenes7643
SOURCE (Princeton)ZNF90
Genetics Home Reference (NIH)ZNF90
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF90  -     chr19:20077994-20121168 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF90  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF90 - 19p12 [CytoView hg19]  ZNF90 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF90 [Mapview hg19]  ZNF90 [Mapview hg38]
OMIM603973   
Gene and transcription
Genbank (Entrez)AK298173 BC137211 BX102781 CN386341 M61870
RefSeq transcript (Entrez)NM_007138
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF90
Cluster EST : UnigeneHs.55304 [ NCBI ]
CGAP (NCI)Hs.55304
Gene ExpressionZNF90 [ NCBI-GEO ]   ZNF90 [ EBI - ARRAY_EXPRESS ]   ZNF90 [ SEEK ]   ZNF90 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF90 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7643
GTEX Portal (Tissue expression)ZNF90
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03938   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03938  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03938
Splice isoforms : SwissVarQ03938
PhosPhoSitePlusQ03938
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF90
DMDM Disease mutations7643
Blocks (Seattle)ZNF90
SuperfamilyQ03938
Peptide AtlasQ03938
IPIIPI00787687   IPI01010008   IPI00981701   IPI00980906   IPI00431525   IPI00946524   IPI00946563   
Protein Interaction databases
DIP (DOE-UCLA)Q03938
IntAct (EBI)Q03938
BioGRIDZNF90
STRING (EMBL)ZNF90
ZODIACZNF90
Ontologies - Pathways
QuickGOQ03938
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF90
Atlas of Cancer Signalling NetworkZNF90
Wikipedia pathwaysZNF90
Orthology - Evolution
OrthoDB7643
Phylogenetic Trees/Animal Genes : TreeFamZNF90
HOVERGENQ03938
HOGENOMQ03938
Homologs : HomoloGeneZNF90
Homology/Alignments : Family Browser (UCSC)ZNF90
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF90 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF90
dbVarZNF90
ClinVarZNF90
1000_GenomesZNF90 
Exome Variant ServerZNF90
ExAC (Exome Aggregation Consortium)ZNF90 (select the gene name)
Genetic variants : HAPMAP7643
Genomic Variants (DGV)ZNF90 [DGVbeta]
DECIPHERZNF90 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF90 
Mutations
ICGC Data PortalZNF90 
TCGA Data PortalZNF90 
Broad Tumor PortalZNF90
OASIS PortalZNF90 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF90  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF90
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF90
DgiDB (Drug Gene Interaction Database)ZNF90
DoCM (Curated mutations)ZNF90 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF90 (select a term)
intoGenZNF90
Cancer3DZNF90(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603973   
Orphanet
MedgenZNF90
Genetic Testing Registry ZNF90
NextProtQ03938 [Medical]
TSGene7643
GENETestsZNF90
Target ValidationZNF90
Huge Navigator ZNF90 [HugePedia]
snp3D : Map Gene to Disease7643
BioCentury BCIQZNF90
ClinGenZNF90
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7643
Chemical/Pharm GKB GenePA37738
Clinical trialZNF90
Miscellaneous
canSAR (ICR)ZNF90 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF90
EVEXZNF90
GoPubMedZNF90
iHOPZNF90
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:35 CEST 2017

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