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ZNF92 (zinc finger protein 92)

Identity

Alias_nameszinc finger protein 92 (HTF12)
Alias_symbol (synonym)HPF12
TF12
Other aliasHEL-203
HTF12
HGNC (Hugo) ZNF92
LocusID (NCBI) 168374
Atlas_Id 76461
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 65373799 and ends at 65401135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF92   13168
Cards
Entrez_Gene (NCBI)ZNF92  168374  zinc finger protein 92
AliasesHEL-203; HPF12; HTF12; TF12
GeneCards (Weizmann)ZNF92
Ensembl hg19 (Hinxton)ENSG00000146757 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146757 [Gene_View]  chr7:65373799-65401135 [Contig_View]  ZNF92 [Vega]
ICGC DataPortalENSG00000146757
TCGA cBioPortalZNF92
AceView (NCBI)ZNF92
Genatlas (Paris)ZNF92
WikiGenes168374
SOURCE (Princeton)ZNF92
Genetics Home Reference (NIH)ZNF92
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF92  -     chr7:65373799-65401135 +  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF92  -     7q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF92 - 7q11.21 [CytoView hg19]  ZNF92 - 7q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF92 [Mapview hg19]  ZNF92 [Mapview hg38]
OMIM603974   
Gene and transcription
Genbank (Entrez)AK091618 AK093566 BC036439 BC040594 BP284170
RefSeq transcript (Entrez)NM_001287532 NM_001287533 NM_001287534 NM_007139 NM_152626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF92
Cluster EST : UnigeneHs.9521 [ NCBI ]
CGAP (NCI)Hs.9521
Alternative Splicing GalleryENSG00000146757
Gene ExpressionZNF92 [ NCBI-GEO ]   ZNF92 [ EBI - ARRAY_EXPRESS ]   ZNF92 [ SEEK ]   ZNF92 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF92 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)168374
GTEX Portal (Tissue expression)ZNF92
Human Protein AtlasENSG00000146757-ZNF92 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03936   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03936  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03936
Splice isoforms : SwissVarQ03936
PhosPhoSitePlusQ03936
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF92
DMDM Disease mutations168374
Blocks (Seattle)ZNF92
SuperfamilyQ03936
Human Protein Atlas [tissue]ENSG00000146757-ZNF92 [tissue]
Peptide AtlasQ03936
HPRD04919
IPIIPI00395321   IPI00413088   IPI00335720   IPI00941169   
Protein Interaction databases
DIP (DOE-UCLA)Q03936
IntAct (EBI)Q03936
FunCoupENSG00000146757
BioGRIDZNF92
STRING (EMBL)ZNF92
ZODIACZNF92
Ontologies - Pathways
QuickGOQ03936
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF92
Atlas of Cancer Signalling NetworkZNF92
Wikipedia pathwaysZNF92
Orthology - Evolution
OrthoDB168374
GeneTree (enSembl)ENSG00000146757
Phylogenetic Trees/Animal Genes : TreeFamZNF92
HOVERGENQ03936
HOGENOMQ03936
Homologs : HomoloGeneZNF92
Homology/Alignments : Family Browser (UCSC)ZNF92
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF92
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF92 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF92
dbVarZNF92
ClinVarZNF92
1000_GenomesZNF92 
Exome Variant ServerZNF92
ExAC (Exome Aggregation Consortium)ENSG00000146757
GNOMAD BrowserENSG00000146757
Genetic variants : HAPMAP168374
Genomic Variants (DGV)ZNF92 [DGVbeta]
DECIPHERZNF92 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF92 
Mutations
ICGC Data PortalZNF92 
TCGA Data PortalZNF92 
Broad Tumor PortalZNF92
OASIS PortalZNF92 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF92  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF92
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF92
DgiDB (Drug Gene Interaction Database)ZNF92
DoCM (Curated mutations)ZNF92 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF92 (select a term)
intoGenZNF92
Cancer3DZNF92(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603974   
Orphanet
MedgenZNF92
Genetic Testing Registry ZNF92
NextProtQ03936 [Medical]
TSGene168374
GENETestsZNF92
Target ValidationZNF92
Huge Navigator ZNF92 [HugePedia]
snp3D : Map Gene to Disease168374
BioCentury BCIQZNF92
ClinGenZNF92
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD168374
Chemical/Pharm GKB GenePA37740
Clinical trialZNF92
Miscellaneous
canSAR (ICR)ZNF92 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF92
EVEXZNF92
GoPubMedZNF92
iHOPZNF92
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:10 CET 2017

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