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ZNF93 (zinc finger protein 93)

Identity

Alias (NCBI)HPF34
HTF34
TF34
ZNF505
HGNC (Hugo) ZNF93
HGNC Alias symbHPF34
TF34
FLJ12488
HGNC Previous nameZNF505
HGNC Previous namezinc finger protein 505
 zinc finger protein 93 (HTF34)
LocusID (NCBI) 81931
Atlas_Id 76462
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 19900946 and ends at 19935575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AP1M1 (19p13.11) / ZNF93 (19p12)CD46 (1q32.2) / ZNF93 (19p12)ZNF93 (19p12) / AP2A2 (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF93   13169
Cards
Entrez_Gene (NCBI)ZNF93    zinc finger protein 93
AliasesHPF34; HTF34; TF34; ZNF505
GeneCards (Weizmann)ZNF93
Ensembl hg19 (Hinxton)ENSG00000184635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184635 [Gene_View]  ENSG00000184635 [Sequence]  chr19:19900946-19935575 [Contig_View]  ZNF93 [Vega]
ICGC DataPortalENSG00000184635
TCGA cBioPortalZNF93
AceView (NCBI)ZNF93
Genatlas (Paris)ZNF93
SOURCE (Princeton)ZNF93
Genetics Home Reference (NIH)ZNF93
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF93  -     chr19:19900946-19935575 +  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF93  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF93 - 19p12 [CytoView hg19]  ZNF93 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000184635
Genome Data Viewer NCBIZNF93 [Mapview hg19]  
OMIM603975   
Gene and transcription
Genbank (Entrez)AK022550 AK096342 AK295921 BC020837 BC038096
RefSeq transcript (Entrez)NM_001004126 NM_031218
Consensus coding sequences : CCDS (NCBI)ZNF93
Gene ExpressionZNF93 [ NCBI-GEO ]   ZNF93 [ EBI - ARRAY_EXPRESS ]   ZNF93 [ SEEK ]   ZNF93 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF93 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF93 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81931
GTEX Portal (Tissue expression)ZNF93
Human Protein AtlasENSG00000184635-ZNF93 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP35789   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP35789  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP35789
PhosPhoSitePlusP35789
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF93
SuperfamilyP35789
AlphaFold pdb e-kbP35789   
Human Protein Atlas [tissue]ENSG00000184635-ZNF93 [tissue]
HPRD10334
Protein Interaction databases
DIP (DOE-UCLA)P35789
IntAct (EBI)P35789
BioGRIDZNF93
STRING (EMBL)ZNF93
ZODIACZNF93
Ontologies - Pathways
QuickGOP35789
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  zinc ion binding  negative regulation of transcription, DNA-templated  negative regulation of transposon integration  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  zinc ion binding  negative regulation of transcription, DNA-templated  negative regulation of transposon integration  
NDEx NetworkZNF93
Atlas of Cancer Signalling NetworkZNF93
Wikipedia pathwaysZNF93
Orthology - Evolution
OrthoDB81931
GeneTree (enSembl)ENSG00000184635
Phylogenetic Trees/Animal Genes : TreeFamZNF93
Homologs : HomoloGeneZNF93
Homology/Alignments : Family Browser (UCSC)ZNF93
Gene fusions - Rearrangements
Fusion : QuiverZNF93
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF93 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF93
dbVarZNF93
ClinVarZNF93
MonarchZNF93
1000_GenomesZNF93 
Exome Variant ServerZNF93
GNOMAD BrowserENSG00000184635
Varsome BrowserZNF93
ACMGZNF93 variants
VarityP35789
Genomic Variants (DGV)ZNF93 [DGVbeta]
DECIPHERZNF93 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF93 
Mutations
ICGC Data PortalZNF93 
TCGA Data PortalZNF93 
Broad Tumor PortalZNF93
OASIS PortalZNF93 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF93  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF93
Mutations and Diseases : HGMDZNF93
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF93
DgiDB (Drug Gene Interaction Database)ZNF93
DoCM (Curated mutations)ZNF93
CIViC (Clinical Interpretations of Variants in Cancer)ZNF93
Cancer3DZNF93
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603975   
Orphanet
DisGeNETZNF93
MedgenZNF93
Genetic Testing Registry ZNF93
NextProtP35789 [Medical]
GENETestsZNF93
Target ValidationZNF93
Huge Navigator ZNF93 [HugePedia]
ClinGenZNF93
Clinical trials, drugs, therapy
MyCancerGenomeZNF93
Protein Interactions : CTDZNF93
Pharm GKB GenePA37741
PharosP35789
Clinical trialZNF93
Miscellaneous
canSAR (ICR)ZNF93
HarmonizomeZNF93
DataMed IndexZNF93
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF93
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:42 CEST 2021

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