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ZNF98 (zinc finger protein 98)

Identity

Alias_symbol (synonym)ZNF739
F7175
Other alias
HGNC (Hugo) ZNF98
LocusID (NCBI) 148198
Atlas_Id 76463
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22391097 and ends at 22422346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF98   13174
Cards
Entrez_Gene (NCBI)ZNF98  148198  zinc finger protein 98
AliasesF7175; ZNF739
GeneCards (Weizmann)ZNF98
Ensembl hg19 (Hinxton)ENSG00000197360 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197360 [Gene_View]  chr19:22391097-22422346 [Contig_View]  ZNF98 [Vega]
ICGC DataPortalENSG00000197360
TCGA cBioPortalZNF98
AceView (NCBI)ZNF98
Genatlas (Paris)ZNF98
WikiGenes148198
SOURCE (Princeton)ZNF98
Genetics Home Reference (NIH)ZNF98
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF98  -     chr19:22391097-22422346 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF98  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF98 - 19p12 [CytoView hg19]  ZNF98 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF98 [Mapview hg19]  ZNF98 [Mapview hg38]
OMIM603980   
Gene and transcription
Genbank (Entrez)BC110576 BC129810
RefSeq transcript (Entrez)NM_001098626
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF98
Cluster EST : UnigeneHs.667355 [ NCBI ]
CGAP (NCI)Hs.667355
Alternative Splicing GalleryENSG00000197360
Gene ExpressionZNF98 [ NCBI-GEO ]   ZNF98 [ EBI - ARRAY_EXPRESS ]   ZNF98 [ SEEK ]   ZNF98 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF98 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148198
GTEX Portal (Tissue expression)ZNF98
Human Protein AtlasENSG00000197360-ZNF98 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NK75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NK75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NK75
Splice isoforms : SwissVarA6NK75
PhosPhoSitePlusA6NK75
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF98
DMDM Disease mutations148198
Blocks (Seattle)ZNF98
SuperfamilyA6NK75
Human Protein Atlas [tissue]ENSG00000197360-ZNF98 [tissue]
Peptide AtlasA6NK75
IPIIPI00472374   
Protein Interaction databases
DIP (DOE-UCLA)A6NK75
IntAct (EBI)A6NK75
FunCoupENSG00000197360
BioGRIDZNF98
STRING (EMBL)ZNF98
ZODIACZNF98
Ontologies - Pathways
QuickGOA6NK75
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF98
Atlas of Cancer Signalling NetworkZNF98
Wikipedia pathwaysZNF98
Orthology - Evolution
OrthoDB148198
GeneTree (enSembl)ENSG00000197360
Phylogenetic Trees/Animal Genes : TreeFamZNF98
HOVERGENA6NK75
HOGENOMA6NK75
Homologs : HomoloGeneZNF98
Homology/Alignments : Family Browser (UCSC)ZNF98
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF98
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF98 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF98
dbVarZNF98
ClinVarZNF98
1000_GenomesZNF98 
Exome Variant ServerZNF98
ExAC (Exome Aggregation Consortium)ENSG00000197360
GNOMAD BrowserENSG00000197360
Genetic variants : HAPMAP148198
Genomic Variants (DGV)ZNF98 [DGVbeta]
DECIPHERZNF98 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF98 
Mutations
ICGC Data PortalZNF98 
TCGA Data PortalZNF98 
Broad Tumor PortalZNF98
OASIS PortalZNF98 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF98  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF98
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF98
DgiDB (Drug Gene Interaction Database)ZNF98
DoCM (Curated mutations)ZNF98 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF98 (select a term)
intoGenZNF98
Cancer3DZNF98(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603980   
Orphanet
MedgenZNF98
Genetic Testing Registry ZNF98
NextProtA6NK75 [Medical]
TSGene148198
GENETestsZNF98
Target ValidationZNF98
Huge Navigator ZNF98 [HugePedia]
snp3D : Map Gene to Disease148198
BioCentury BCIQZNF98
ClinGenZNF98
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148198
Chemical/Pharm GKB GenePA37746
Clinical trialZNF98
Miscellaneous
canSAR (ICR)ZNF98 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF98
EVEXZNF98
GoPubMedZNF98
iHOPZNF98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:10 CET 2017

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