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ZNF98 (zinc finger protein 98)

Identity

Alias (NCBI)F7175
ZNF739
HGNC (Hugo) ZNF98
HGNC Alias symbZNF739
F7175
HGNC Alias namezinc finger protein 739
LocusID (NCBI) 148198
Atlas_Id 76463
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22391019 and ends at 22422346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF98   13174
Cards
Entrez_Gene (NCBI)ZNF98    zinc finger protein 98
AliasesF7175; ZNF739
GeneCards (Weizmann)ZNF98
Ensembl hg19 (Hinxton)ENSG00000197360 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197360 [Gene_View]  ENSG00000197360 [Sequence]  chr19:22391019-22422346 [Contig_View]  ZNF98 [Vega]
ICGC DataPortalENSG00000197360
TCGA cBioPortalZNF98
AceView (NCBI)ZNF98
Genatlas (Paris)ZNF98
SOURCE (Princeton)ZNF98
Genetics Home Reference (NIH)ZNF98
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF98  -     chr19:22391019-22422346 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF98  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF98 - 19p12 [CytoView hg19]  ZNF98 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000197360
Genome Data Viewer NCBIZNF98 [Mapview hg19]  
OMIM603980   
Gene and transcription
Genbank (Entrez)BC110576 BC129810
RefSeq transcript (Entrez)NM_001098626
Consensus coding sequences : CCDS (NCBI)ZNF98
Gene ExpressionZNF98 [ NCBI-GEO ]   ZNF98 [ EBI - ARRAY_EXPRESS ]   ZNF98 [ SEEK ]   ZNF98 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF98 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF98 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148198
GTEX Portal (Tissue expression)ZNF98
Human Protein AtlasENSG00000197360-ZNF98 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NK75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NK75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NK75
PhosPhoSitePlusA6NK75
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF98
SuperfamilyA6NK75
AlphaFold pdb e-kbA6NK75   
Human Protein Atlas [tissue]ENSG00000197360-ZNF98 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A6NK75
IntAct (EBI)A6NK75
BioGRIDZNF98
STRING (EMBL)ZNF98
ZODIACZNF98
Ontologies - Pathways
QuickGOA6NK75
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF98
Atlas of Cancer Signalling NetworkZNF98
Wikipedia pathwaysZNF98
Orthology - Evolution
OrthoDB148198
GeneTree (enSembl)ENSG00000197360
Phylogenetic Trees/Animal Genes : TreeFamZNF98
Homologs : HomoloGeneZNF98
Homology/Alignments : Family Browser (UCSC)ZNF98
Gene fusions - Rearrangements
Fusion : QuiverZNF98
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF98 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF98
dbVarZNF98
ClinVarZNF98
MonarchZNF98
1000_GenomesZNF98 
Exome Variant ServerZNF98
GNOMAD BrowserENSG00000197360
Varsome BrowserZNF98
ACMGZNF98 variants
VarityA6NK75
Genomic Variants (DGV)ZNF98 [DGVbeta]
DECIPHERZNF98 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF98 
Mutations
ICGC Data PortalZNF98 
TCGA Data PortalZNF98 
Broad Tumor PortalZNF98
OASIS PortalZNF98 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF98  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF98
Mutations and Diseases : HGMDZNF98
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF98
DgiDB (Drug Gene Interaction Database)ZNF98
DoCM (Curated mutations)ZNF98
CIViC (Clinical Interpretations of Variants in Cancer)ZNF98
Cancer3DZNF98
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603980   
Orphanet
DisGeNETZNF98
MedgenZNF98
Genetic Testing Registry ZNF98
NextProtA6NK75 [Medical]
GENETestsZNF98
Target ValidationZNF98
Huge Navigator ZNF98 [HugePedia]
ClinGenZNF98
Clinical trials, drugs, therapy
MyCancerGenomeZNF98
Protein Interactions : CTDZNF98
Pharm GKB GenePA37746
PharosA6NK75
Clinical trialZNF98
Miscellaneous
canSAR (ICR)ZNF98
HarmonizomeZNF98
ARCHS4ZNF98
DataMed IndexZNF98
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF98
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:34:23 CET 2022

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