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ZNF99 (zinc finger protein 99)

Identity

Alias (NCBI)C19orf9
F8281
HGNC (Hugo) ZNF99
HGNC Alias symbMGC24986
HGNC Previous nameC19orf9
HGNC Previous namezinc finger protein 99 (F8281)
 chromosome 19 open reading frame 9
LocusID (NCBI) 7652
Atlas_Id 76464
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22752183 and ends at 22784151 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF99   13175
Cards
Entrez_Gene (NCBI)ZNF99    zinc finger protein 99
AliasesC19orf9; F8281
GeneCards (Weizmann)ZNF99
Ensembl hg19 (Hinxton)ENSG00000213973 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213973 [Gene_View]  ENSG00000213973 [Sequence]  chr19:22752183-22784151 [Contig_View]  ZNF99 [Vega]
ICGC DataPortalENSG00000213973
TCGA cBioPortalZNF99
AceView (NCBI)ZNF99
Genatlas (Paris)ZNF99
SOURCE (Princeton)ZNF99
Genetics Home Reference (NIH)ZNF99
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF99  -     chr19:22752183-22784151 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF99  -     19p12   [Description]    (hg19-Feb_2009)
GoldenPathZNF99 - 19p12 [CytoView hg19]  ZNF99 - 19p12 [CytoView hg38]
ImmunoBaseENSG00000213973
Genome Data Viewer NCBIZNF99 [Mapview hg19]  
OMIM603981   
Gene and transcription
Genbank (Entrez)BC021822
RefSeq transcript (Entrez)NM_001080409
Consensus coding sequences : CCDS (NCBI)ZNF99
Gene ExpressionZNF99 [ NCBI-GEO ]   ZNF99 [ EBI - ARRAY_EXPRESS ]   ZNF99 [ SEEK ]   ZNF99 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF99 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF99 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7652
GTEX Portal (Tissue expression)ZNF99
Human Protein AtlasENSG00000213973-ZNF99 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXY4
PhosPhoSitePlusA8MXY4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF99
SuperfamilyA8MXY4
AlphaFold pdb e-kbA8MXY4   
Human Protein Atlas [tissue]ENSG00000213973-ZNF99 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A8MXY4
IntAct (EBI)A8MXY4
BioGRIDZNF99
STRING (EMBL)ZNF99
ZODIACZNF99
Ontologies - Pathways
QuickGOA8MXY4
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA binding  nucleus  nucleus  regulation of transcription by RNA polymerase II  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF99
Atlas of Cancer Signalling NetworkZNF99
Wikipedia pathwaysZNF99
Orthology - Evolution
OrthoDB7652
GeneTree (enSembl)ENSG00000213973
Phylogenetic Trees/Animal Genes : TreeFamZNF99
Homologs : HomoloGeneZNF99
Homology/Alignments : Family Browser (UCSC)ZNF99
Gene fusions - Rearrangements
Fusion : QuiverZNF99
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF99
dbVarZNF99
ClinVarZNF99
MonarchZNF99
1000_GenomesZNF99 
Exome Variant ServerZNF99
GNOMAD BrowserENSG00000213973
Varsome BrowserZNF99
ACMGZNF99 variants
VarityA8MXY4
Genomic Variants (DGV)ZNF99 [DGVbeta]
DECIPHERZNF99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF99 
Mutations
ICGC Data PortalZNF99 
TCGA Data PortalZNF99 
Broad Tumor PortalZNF99
OASIS PortalZNF99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF99  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF99
Mutations and Diseases : HGMDZNF99
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF99
DgiDB (Drug Gene Interaction Database)ZNF99
DoCM (Curated mutations)ZNF99
CIViC (Clinical Interpretations of Variants in Cancer)ZNF99
Cancer3DZNF99
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603981   
Orphanet
DisGeNETZNF99
MedgenZNF99
Genetic Testing Registry ZNF99
NextProtA8MXY4 [Medical]
GENETestsZNF99
Target ValidationZNF99
Huge Navigator ZNF99 [HugePedia]
ClinGenZNF99
Clinical trials, drugs, therapy
MyCancerGenomeZNF99
Protein Interactions : CTDZNF99
Pharm GKB GenePA37747
PharosA8MXY4
Clinical trialZNF99
Miscellaneous
canSAR (ICR)ZNF99
HarmonizomeZNF99
ARCHS4ZNF99
DataMed IndexZNF99
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 14:00:46 CET 2022

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