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ZNF99 (zinc finger protein 99)

Identity

Alias_namesC19orf9
zinc finger protein 99 (F8281)
chromosome 19 open reading frame 9
Alias_symbol (synonym)MGC24986
Other aliasF8281
HGNC (Hugo) ZNF99
LocusID (NCBI) 7652
Atlas_Id 76464
Location 19p12  [Link to chromosome band 19p12]
Location_base_pair Starts at 22752183 and ends at 22784171 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF99   13175
Cards
Entrez_Gene (NCBI)ZNF99  7652  zinc finger protein 99
AliasesC19orf9; F8281
GeneCards (Weizmann)ZNF99
Ensembl hg19 (Hinxton)ENSG00000213973 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213973 [Gene_View]  chr19:22752183-22784171 [Contig_View]  ZNF99 [Vega]
ICGC DataPortalENSG00000213973
TCGA cBioPortalZNF99
AceView (NCBI)ZNF99
Genatlas (Paris)ZNF99
WikiGenes7652
SOURCE (Princeton)ZNF99
Genetics Home Reference (NIH)ZNF99
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF99  -     chr19:22752183-22784171 -  19p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF99  -     19p12   [Description]    (hg19-Feb_2009)
EnsemblZNF99 - 19p12 [CytoView hg19]  ZNF99 - 19p12 [CytoView hg38]
Mapping of homologs : NCBIZNF99 [Mapview hg19]  ZNF99 [Mapview hg38]
OMIM603981   
Gene and transcription
Genbank (Entrez)BC021822
RefSeq transcript (Entrez)NM_001080409
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF99
Cluster EST : UnigeneHs.737077 [ NCBI ]
CGAP (NCI)Hs.737077
Alternative Splicing GalleryENSG00000213973
Gene ExpressionZNF99 [ NCBI-GEO ]   ZNF99 [ EBI - ARRAY_EXPRESS ]   ZNF99 [ SEEK ]   ZNF99 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF99 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7652
GTEX Portal (Tissue expression)ZNF99
Human Protein AtlasENSG00000213973-ZNF99 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXY4
Splice isoforms : SwissVarA8MXY4
PhosPhoSitePlusA8MXY4
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF99
DMDM Disease mutations7652
Blocks (Seattle)ZNF99
SuperfamilyA8MXY4
Human Protein Atlas [tissue]ENSG00000213973-ZNF99 [tissue]
Peptide AtlasA8MXY4
IPIIPI01011359   IPI00102872   
Protein Interaction databases
DIP (DOE-UCLA)A8MXY4
IntAct (EBI)A8MXY4
FunCoupENSG00000213973
BioGRIDZNF99
STRING (EMBL)ZNF99
ZODIACZNF99
Ontologies - Pathways
QuickGOA8MXY4
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF99
Atlas of Cancer Signalling NetworkZNF99
Wikipedia pathwaysZNF99
Orthology - Evolution
OrthoDB7652
GeneTree (enSembl)ENSG00000213973
Phylogenetic Trees/Animal Genes : TreeFamZNF99
HOVERGENA8MXY4
HOGENOMA8MXY4
Homologs : HomoloGeneZNF99
Homology/Alignments : Family Browser (UCSC)ZNF99
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF99
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF99
dbVarZNF99
ClinVarZNF99
1000_GenomesZNF99 
Exome Variant ServerZNF99
ExAC (Exome Aggregation Consortium)ENSG00000213973
GNOMAD BrowserENSG00000213973
Genetic variants : HAPMAP7652
Genomic Variants (DGV)ZNF99 [DGVbeta]
DECIPHERZNF99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF99 
Mutations
ICGC Data PortalZNF99 
TCGA Data PortalZNF99 
Broad Tumor PortalZNF99
OASIS PortalZNF99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF99  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF99
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF99
DgiDB (Drug Gene Interaction Database)ZNF99
DoCM (Curated mutations)ZNF99 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF99 (select a term)
intoGenZNF99
Cancer3DZNF99(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603981   
Orphanet
MedgenZNF99
Genetic Testing Registry ZNF99
NextProtA8MXY4 [Medical]
TSGene7652
GENETestsZNF99
Target ValidationZNF99
Huge Navigator ZNF99 [HugePedia]
snp3D : Map Gene to Disease7652
BioCentury BCIQZNF99
ClinGenZNF99
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7652
Chemical/Pharm GKB GenePA37747
Clinical trialZNF99
Miscellaneous
canSAR (ICR)ZNF99 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF99
EVEXZNF99
GoPubMedZNF99
iHOPZNF99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:10 CET 2017

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