Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNFX1 (zinc finger NFX1-type containing 1)

Identity

Alias (NCBI)-
HGNC (Hugo) ZNFX1
HGNC Alias symbKIAA1404
FLJ11277
HGNC Previous namezinc finger, NFX1-type containing 1
LocusID (NCBI) 57169
Atlas_Id 46397
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49245901 and ends at 49278057 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AHNAK (11q12.3) / ZNFX1 (20q13.13)CSDE1 (1p13.2) / ZNFX1 (20q13.13)CTNND1 (11q12.1) / ZNFX1 (20q13.13)
EIF4G2 (11p15.3) / ZNFX1 (20q13.13)FXYD3 (19q13.12) / ZNFX1 (20q13.13)MYL6 (12q13.2) / ZNFX1 (20q13.13)
P4HB (17q25.3) / ZNFX1 (20q13.13)PSMA3 (14q23.1) / ZNFX1 (20q13.13)SERINC2 (1p35.2) / ZNFX1 (20q13.13)
TALDO1 (11p15.5) / ZNFX1 (20q13.13)TIMP3 (22q12.3) / ZNFX1 (20q13.13)ZNFX1 (20q13.13) / CCDC181 (1q24.2)
ZNFX1 (20q13.13) / CNBD2 (20q11.23)ZNFX1 (20q13.13) / MPO (17q22)ZNFX1 (20q13.13) / ZNFX1 (20q13.13)
AHNAK 11q12.3 / ZNFX1 20q13.13CTNND1 11q12.1 / ZNFX1 20q13.13EIF4G2 11p15.3 / ZNFX1 20q13.13
FXYD3 19q13.12 / ZNFX1 20q13.13MYL6 12q13.2 / ZNFX1 20q13.13P4HB 17q25.3 / ZNFX1 20q13.13
PSMA3 14q23.1 / ZNFX1 20q13.13SERINC2 1p35.2 / ZNFX1 20q13.13TALDO1 11p15.5 / ZNFX1 20q13.13
TIMP3 22q12.3 / ZNFX1 20q13.13ZNFX1 20q13.13 C20orf152

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)ZNFX1   29271
Cards
Entrez_Gene (NCBI)ZNFX1    zinc finger NFX1-type containing 1
Aliases
GeneCards (Weizmann)ZNFX1
Ensembl hg19 (Hinxton)ENSG00000124201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124201 [Gene_View]  ENSG00000124201 [Sequence]  chr20:49245901-49278057 [Contig_View]  ZNFX1 [Vega]
ICGC DataPortalENSG00000124201
TCGA cBioPortalZNFX1
AceView (NCBI)ZNFX1
Genatlas (Paris)ZNFX1
SOURCE (Princeton)ZNFX1
Genetics Home Reference (NIH)ZNFX1
Genomic and cartography
GoldenPath hg38 (UCSC)ZNFX1  -     chr20:49245901-49278057 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNFX1  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathZNFX1 - 20q13.13 [CytoView hg19]  ZNFX1 - 20q13.13 [CytoView hg38]
ImmunoBaseENSG00000124201
Genome Data Viewer NCBIZNFX1 [Mapview hg19]  
OMIM618931   
Gene and transcription
Genbank (Entrez)AB037825 AK000573 AK002139 AK022641 AK023836
RefSeq transcript (Entrez)NM_021035
Consensus coding sequences : CCDS (NCBI)ZNFX1
Gene ExpressionZNFX1 [ NCBI-GEO ]   ZNFX1 [ EBI - ARRAY_EXPRESS ]   ZNFX1 [ SEEK ]   ZNFX1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNFX1 [ Firebrowse - Broad ]
GenevisibleExpression of ZNFX1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57169
GTEX Portal (Tissue expression)ZNFX1
Human Protein AtlasENSG00000124201-ZNFX1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2E3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2E3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2E3
PhosPhoSitePlusQ9P2E3
Domains : Interpro (EBI)ARM-type_fold    DNA2/NAM7-like_C    DNA2/NAM7_AAA_11    P-loop_NTPase    Znf_NFX1   
Domain families : Pfam (Sanger)AAA_11 (PF13086)    AAA_12 (PF13087)   
Domain families : Pfam (NCBI)pfam13086    pfam13087   
Domain families : Smart (EMBL)ZnF_NFX (SM00438)  
Conserved Domain (NCBI)ZNFX1
SuperfamilyQ9P2E3
AlphaFold pdb e-kbQ9P2E3   
Human Protein Atlas [tissue]ENSG00000124201-ZNFX1 [tissue]
HPRD11142
Protein Interaction databases
DIP (DOE-UCLA)Q9P2E3
IntAct (EBI)Q9P2E3
BioGRIDZNFX1
STRING (EMBL)ZNFX1
ZODIACZNFX1
Ontologies - Pathways
QuickGOQ9P2E3
Ontology : AmiGORNA binding  RNA binding  helicase activity  zinc ion binding  heterochromatin assembly by small RNA  nuclear RNA-directed RNA polymerase complex  
Ontology : EGO-EBIRNA binding  RNA binding  helicase activity  zinc ion binding  heterochromatin assembly by small RNA  nuclear RNA-directed RNA polymerase complex  
NDEx NetworkZNFX1
Atlas of Cancer Signalling NetworkZNFX1
Wikipedia pathwaysZNFX1
Orthology - Evolution
OrthoDB57169
GeneTree (enSembl)ENSG00000124201
Phylogenetic Trees/Animal Genes : TreeFamZNFX1
Homologs : HomoloGeneZNFX1
Homology/Alignments : Family Browser (UCSC)ZNFX1
Gene fusions - Rearrangements
Fusion : MitelmanAHNAK/ZNFX1 [11q12.3/20q13.13]  
Fusion : MitelmanCTNND1/ZNFX1 [11q12.1/20q13.13]  
Fusion : MitelmanEIF4G2/ZNFX1 [11p15.3/20q13.13]  
Fusion : MitelmanFXYD3/ZNFX1 [19q13.12/20q13.13]  
Fusion : MitelmanMYL6/ZNFX1 [12q13.2/20q13.13]  
Fusion : MitelmanP4HB/ZNFX1 [17q25.3/20q13.13]  
Fusion : MitelmanPSMA3/ZNFX1 [14q23.1/20q13.13]  
Fusion : MitelmanSERINC2/ZNFX1 [1p35.2/20q13.13]  
Fusion : MitelmanTALDO1/ZNFX1 [11p15.5/20q13.13]  
Fusion : MitelmanTIMP3/ZNFX1 [22q12.3/20q13.13]  
Fusion : MitelmanZNFX1/CNBD2 [20q13.13/20q11.23]  
Fusion : QuiverZNFX1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNFX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNFX1
dbVarZNFX1
ClinVarZNFX1
MonarchZNFX1
1000_GenomesZNFX1 
Exome Variant ServerZNFX1
GNOMAD BrowserENSG00000124201
Varsome BrowserZNFX1
ACMGZNFX1 variants
VarityQ9P2E3
Genomic Variants (DGV)ZNFX1 [DGVbeta]
DECIPHERZNFX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNFX1 
Mutations
ICGC Data PortalZNFX1 
TCGA Data PortalZNFX1 
Broad Tumor PortalZNFX1
OASIS PortalZNFX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNFX1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNFX1
Mutations and Diseases : HGMDZNFX1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNFX1
DgiDB (Drug Gene Interaction Database)ZNFX1
DoCM (Curated mutations)ZNFX1
CIViC (Clinical Interpretations of Variants in Cancer)ZNFX1
Cancer3DZNFX1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618931   
Orphanet
DisGeNETZNFX1
MedgenZNFX1
Genetic Testing Registry ZNFX1
NextProtQ9P2E3 [Medical]
GENETestsZNFX1
Target ValidationZNFX1
Huge Navigator ZNFX1 [HugePedia]
ClinGenZNFX1
Clinical trials, drugs, therapy
MyCancerGenomeZNFX1
Protein Interactions : CTDZNFX1
Pharm GKB GenePA143485687
PharosQ9P2E3
Clinical trialZNFX1
Miscellaneous
canSAR (ICR)ZNFX1
HarmonizomeZNFX1
DataMed IndexZNFX1
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNFX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:39:30 CEST 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.