Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNHIT1 (zinc finger, HIT-type containing 1)

Identity

Alias_namesZNFN4A1
zinc finger protein, subfamily 4A (HIT domain containing), member 1
zinc finger, HIT domain containing 1
Alias_symbol (synonym)CG1I
H_DJ0747G18.14
Other alias
HGNC (Hugo) ZNHIT1
LocusID (NCBI) 10467
Atlas_Id 76465
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100860985 and ends at 100867471 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNHIT1 (7q22.1) / DPF2 (11q13.1)ZNHIT1 (7q22.1) / PPP1R1B (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNHIT1   21688
Cards
Entrez_Gene (NCBI)ZNHIT1  10467  zinc finger, HIT-type containing 1
AliasesCG1I; ZNFN4A1
GeneCards (Weizmann)ZNHIT1
Ensembl hg19 (Hinxton)ENSG00000106400 [Gene_View]  chr7:100860985-100867471 [Contig_View]  ZNHIT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106400 [Gene_View]  chr7:100860985-100867471 [Contig_View]  ZNHIT1 [Vega]
ICGC DataPortalENSG00000106400
TCGA cBioPortalZNHIT1
AceView (NCBI)ZNHIT1
Genatlas (Paris)ZNHIT1
WikiGenes10467
SOURCE (Princeton)ZNHIT1
Genetics Home Reference (NIH)ZNHIT1
Genomic and cartography
GoldenPath hg19 (UCSC)ZNHIT1  -     chr7:100860985-100867471 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNHIT1  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblZNHIT1 - 7q22.1 [CytoView hg19]  ZNHIT1 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZNHIT1 [Mapview hg19]  ZNHIT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF093571 AK092478 AK125123 AK312136 BC001877
RefSeq transcript (Entrez)NM_006349
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ZNHIT1
Cluster EST : UnigeneHs.211079 [ NCBI ]
CGAP (NCI)Hs.211079
Alternative Splicing GalleryENSG00000106400
Gene ExpressionZNHIT1 [ NCBI-GEO ]   ZNHIT1 [ EBI - ARRAY_EXPRESS ]   ZNHIT1 [ SEEK ]   ZNHIT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNHIT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10467
GTEX Portal (Tissue expression)ZNHIT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43257   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43257  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43257
Splice isoforms : SwissVarO43257
PhosPhoSitePlusO43257
Domaine pattern : Prosite (Expaxy)ZF_HIT (PS51083)   
Domains : Interpro (EBI)Znf_HIT   
Domain families : Pfam (Sanger)zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04438   
Conserved Domain (NCBI)ZNHIT1
DMDM Disease mutations10467
Blocks (Seattle)ZNHIT1
SuperfamilyO43257
Human Protein AtlasENSG00000106400
Peptide AtlasO43257
HPRD15892
IPIIPI00007358   IPI00883591   
Protein Interaction databases
DIP (DOE-UCLA)O43257
IntAct (EBI)O43257
FunCoupENSG00000106400
BioGRIDZNHIT1
STRING (EMBL)ZNHIT1
ZODIACZNHIT1
Ontologies - Pathways
QuickGOO43257
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  Swr1 complex  protein binding  nucleus  regulation of histone deacetylation  nucleosome binding  regulation of T cell proliferation  histone deacetylase binding  histone exchange  metal ion binding  negative regulation of G0 to G1 transition  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  Swr1 complex  protein binding  nucleus  regulation of histone deacetylation  nucleosome binding  regulation of T cell proliferation  histone deacetylase binding  histone exchange  metal ion binding  negative regulation of G0 to G1 transition  
NDEx NetworkZNHIT1
Atlas of Cancer Signalling NetworkZNHIT1
Wikipedia pathwaysZNHIT1
Orthology - Evolution
OrthoDB10467
GeneTree (enSembl)ENSG00000106400
Phylogenetic Trees/Animal Genes : TreeFamZNHIT1
HOVERGENO43257
HOGENOMO43257
Homologs : HomoloGeneZNHIT1
Homology/Alignments : Family Browser (UCSC)ZNHIT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNHIT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNHIT1
dbVarZNHIT1
ClinVarZNHIT1
1000_GenomesZNHIT1 
Exome Variant ServerZNHIT1
ExAC (Exome Aggregation Consortium)ZNHIT1 (select the gene name)
Genetic variants : HAPMAP10467
Genomic Variants (DGV)ZNHIT1 [DGVbeta]
DECIPHER (Syndromes)7:100860985-100867471  ENSG00000106400
CONAN: Copy Number AnalysisZNHIT1 
Mutations
ICGC Data PortalZNHIT1 
TCGA Data PortalZNHIT1 
Broad Tumor PortalZNHIT1
OASIS PortalZNHIT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNHIT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNHIT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNHIT1
DgiDB (Drug Gene Interaction Database)ZNHIT1
DoCM (Curated mutations)ZNHIT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNHIT1 (select a term)
intoGenZNHIT1
Cancer3DZNHIT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNHIT1
Genetic Testing Registry ZNHIT1
NextProtO43257 [Medical]
TSGene10467
GENETestsZNHIT1
Huge Navigator ZNHIT1 [HugePedia]
snp3D : Map Gene to Disease10467
BioCentury BCIQZNHIT1
ClinGenZNHIT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10467
Chemical/Pharm GKB GenePA134947251
Clinical trialZNHIT1
Miscellaneous
canSAR (ICR)ZNHIT1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNHIT1
EVEXZNHIT1
GoPubMedZNHIT1
iHOPZNHIT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:08 CET 2017

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