Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNHIT2 (zinc finger HIT-type containing 2)

Identity

Alias_namesC11orf5
chromosome 11 open reading frame 5
zinc finger, HIT domain containing 2
Alias_symbol (synonym)FON
Other alias
HGNC (Hugo) ZNHIT2
LocusID (NCBI) 741
Atlas_Id 76466
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65116403 and ends at 65117738 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNHIT2   1177
Cards
Entrez_Gene (NCBI)ZNHIT2  741  zinc finger HIT-type containing 2
AliasesC11orf5; FON
GeneCards (Weizmann)ZNHIT2
Ensembl hg19 (Hinxton)ENSG00000174276 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174276 [Gene_View]  chr11:65116403-65117738 [Contig_View]  ZNHIT2 [Vega]
ICGC DataPortalENSG00000174276
TCGA cBioPortalZNHIT2
AceView (NCBI)ZNHIT2
Genatlas (Paris)ZNHIT2
WikiGenes741
SOURCE (Princeton)ZNHIT2
Genetics Home Reference (NIH)ZNHIT2
Genomic and cartography
GoldenPath hg38 (UCSC)ZNHIT2  -     chr11:65116403-65117738 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNHIT2  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblZNHIT2 - 11q13.1 [CytoView hg19]  ZNHIT2 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIZNHIT2 [Mapview hg19]  ZNHIT2 [Mapview hg38]
OMIM604575   
Gene and transcription
Genbank (Entrez)AF119497 AK027081 AK223333 AK223358 BC029825
RefSeq transcript (Entrez)NM_014205
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNHIT2
Cluster EST : UnigeneHs.121025 [ NCBI ]
CGAP (NCI)Hs.121025
Alternative Splicing GalleryENSG00000174276
Gene ExpressionZNHIT2 [ NCBI-GEO ]   ZNHIT2 [ EBI - ARRAY_EXPRESS ]   ZNHIT2 [ SEEK ]   ZNHIT2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNHIT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)741
GTEX Portal (Tissue expression)ZNHIT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHR6
Splice isoforms : SwissVarQ9UHR6
PhosPhoSitePlusQ9UHR6
Domaine pattern : Prosite (Expaxy)ZF_HIT (PS51083)   
Domains : Interpro (EBI)Znf_HIT   
Domain families : Pfam (Sanger)zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04438   
Conserved Domain (NCBI)ZNHIT2
DMDM Disease mutations741
Blocks (Seattle)ZNHIT2
PDB (SRS)1X4S   
PDB (PDBSum)1X4S   
PDB (IMB)1X4S   
PDB (RSDB)1X4S   
Structural Biology KnowledgeBase1X4S   
SCOP (Structural Classification of Proteins)1X4S   
CATH (Classification of proteins structures)1X4S   
SuperfamilyQ9UHR6
Human Protein AtlasENSG00000174276
Peptide AtlasQ9UHR6
HPRD05200
IPIIPI00003318   IPI00976142   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHR6
IntAct (EBI)Q9UHR6
FunCoupENSG00000174276
BioGRIDZNHIT2
STRING (EMBL)ZNHIT2
ZODIACZNHIT2
Ontologies - Pathways
QuickGOQ9UHR6
Ontology : AmiGOneurogenesis  metal ion binding  
Ontology : EGO-EBIneurogenesis  metal ion binding  
NDEx NetworkZNHIT2
Atlas of Cancer Signalling NetworkZNHIT2
Wikipedia pathwaysZNHIT2
Orthology - Evolution
OrthoDB741
GeneTree (enSembl)ENSG00000174276
Phylogenetic Trees/Animal Genes : TreeFamZNHIT2
HOVERGENQ9UHR6
HOGENOMQ9UHR6
Homologs : HomoloGeneZNHIT2
Homology/Alignments : Family Browser (UCSC)ZNHIT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNHIT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNHIT2
dbVarZNHIT2
ClinVarZNHIT2
1000_GenomesZNHIT2 
Exome Variant ServerZNHIT2
ExAC (Exome Aggregation Consortium)ZNHIT2 (select the gene name)
Genetic variants : HAPMAP741
Genomic Variants (DGV)ZNHIT2 [DGVbeta]
DECIPHERZNHIT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNHIT2 
Mutations
ICGC Data PortalZNHIT2 
TCGA Data PortalZNHIT2 
Broad Tumor PortalZNHIT2
OASIS PortalZNHIT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNHIT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNHIT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNHIT2
DgiDB (Drug Gene Interaction Database)ZNHIT2
DoCM (Curated mutations)ZNHIT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNHIT2 (select a term)
intoGenZNHIT2
Cancer3DZNHIT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604575   
Orphanet
MedgenZNHIT2
Genetic Testing Registry ZNHIT2
NextProtQ9UHR6 [Medical]
TSGene741
GENETestsZNHIT2
Target ValidationZNHIT2
Huge Navigator ZNHIT2 [HugePedia]
snp3D : Map Gene to Disease741
BioCentury BCIQZNHIT2
ClinGenZNHIT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD741
Chemical/Pharm GKB GenePA25496
Clinical trialZNHIT2
Miscellaneous
canSAR (ICR)ZNHIT2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNHIT2
EVEXZNHIT2
GoPubMedZNHIT2
iHOPZNHIT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:51:37 CEST 2017
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