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ZNHIT3 (zinc finger HIT-type containing 3)

Identity

Alias_namesTRIP3
thyroid hormone receptor interactor 3
zinc finger, HIT type 3
Other alias
HGNC (Hugo) ZNHIT3
LocusID (NCBI) 9326
Atlas_Id 76467
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36486627 and ends at 36499310 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NAPB (20p11.21) / ZNHIT3 (17q12)ZNHIT3 (17q12) / ZNHIT3 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNHIT3   12309
Cards
Entrez_Gene (NCBI)ZNHIT3  9326  zinc finger HIT-type containing 3
AliasesTRIP3
GeneCards (Weizmann)ZNHIT3
Ensembl hg19 (Hinxton)ENSG00000273611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273611 [Gene_View]  chr17:36486627-36499310 [Contig_View]  ZNHIT3 [Vega]
ICGC DataPortalENSG00000273611
TCGA cBioPortalZNHIT3
AceView (NCBI)ZNHIT3
Genatlas (Paris)ZNHIT3
WikiGenes9326
SOURCE (Princeton)ZNHIT3
Genetics Home Reference (NIH)ZNHIT3
Genomic and cartography
GoldenPath hg38 (UCSC)ZNHIT3  -     chr17:36486627-36499310 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNHIT3  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblZNHIT3 - 17q12 [CytoView hg19]  ZNHIT3 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIZNHIT3 [Mapview hg19]  ZNHIT3 [Mapview hg38]
OMIM604500   
Gene and transcription
Genbank (Entrez)AB209193 AF400652 AK290858 AK308583 AK310022
RefSeq transcript (Entrez)NM_001033577 NM_001281432 NM_001281433 NM_001281434 NM_004773
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187614
Consensus coding sequences : CCDS (NCBI)ZNHIT3
Cluster EST : UnigeneHs.2210 [ NCBI ]
CGAP (NCI)Hs.2210
Alternative Splicing GalleryENSG00000273611
Gene ExpressionZNHIT3 [ NCBI-GEO ]   ZNHIT3 [ EBI - ARRAY_EXPRESS ]   ZNHIT3 [ SEEK ]   ZNHIT3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNHIT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9326
GTEX Portal (Tissue expression)ZNHIT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15649   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15649  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15649
Splice isoforms : SwissVarQ15649
PhosPhoSitePlusQ15649
Domaine pattern : Prosite (Expaxy)ZF_HIT (PS51083)   
Domains : Interpro (EBI)Znf_HIT   
Domain families : Pfam (Sanger)zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04438   
Conserved Domain (NCBI)ZNHIT3
DMDM Disease mutations9326
Blocks (Seattle)ZNHIT3
PDB (SRS)2YQQ    5L85   
PDB (PDBSum)2YQQ    5L85   
PDB (IMB)2YQQ    5L85   
PDB (RSDB)2YQQ    5L85   
Structural Biology KnowledgeBase2YQQ    5L85   
SCOP (Structural Classification of Proteins)2YQQ    5L85   
CATH (Classification of proteins structures)2YQQ    5L85   
SuperfamilyQ15649
Human Protein AtlasENSG00000273611
Peptide AtlasQ15649
HPRD05139
IPIIPI00178888   IPI00555619   
Protein Interaction databases
DIP (DOE-UCLA)Q15649
IntAct (EBI)Q15649
FunCoupENSG00000273611
BioGRIDZNHIT3
STRING (EMBL)ZNHIT3
ZODIACZNHIT3
Ontologies - Pathways
QuickGOQ15649
Ontology : AmiGOprotein binding  intracellular  regulation of transcription, DNA-templated  metal ion binding  thyroid hormone receptor binding  
Ontology : EGO-EBIprotein binding  intracellular  regulation of transcription, DNA-templated  metal ion binding  thyroid hormone receptor binding  
NDEx NetworkZNHIT3
Atlas of Cancer Signalling NetworkZNHIT3
Wikipedia pathwaysZNHIT3
Orthology - Evolution
OrthoDB9326
GeneTree (enSembl)ENSG00000273611
Phylogenetic Trees/Animal Genes : TreeFamZNHIT3
HOVERGENQ15649
HOGENOMQ15649
Homologs : HomoloGeneZNHIT3
Homology/Alignments : Family Browser (UCSC)ZNHIT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNHIT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNHIT3
dbVarZNHIT3
ClinVarZNHIT3
1000_GenomesZNHIT3 
Exome Variant ServerZNHIT3
ExAC (Exome Aggregation Consortium)ZNHIT3 (select the gene name)
Genetic variants : HAPMAP9326
Genomic Variants (DGV)ZNHIT3 [DGVbeta]
DECIPHERZNHIT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNHIT3 
Mutations
ICGC Data PortalZNHIT3 
TCGA Data PortalZNHIT3 
Broad Tumor PortalZNHIT3
OASIS PortalZNHIT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNHIT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNHIT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNHIT3
DgiDB (Drug Gene Interaction Database)ZNHIT3
DoCM (Curated mutations)ZNHIT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNHIT3 (select a term)
intoGenZNHIT3
Cancer3DZNHIT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604500   
Orphanet
MedgenZNHIT3
Genetic Testing Registry ZNHIT3
NextProtQ15649 [Medical]
TSGene9326
GENETestsZNHIT3
Huge Navigator ZNHIT3 [HugePedia]
snp3D : Map Gene to Disease9326
BioCentury BCIQZNHIT3
ClinGenZNHIT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9326
Chemical/Pharm GKB GenePA36987
Clinical trialZNHIT3
Miscellaneous
canSAR (ICR)ZNHIT3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNHIT3
EVEXZNHIT3
GoPubMedZNHIT3
iHOPZNHIT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:04:06 CEST 2017

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