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ZNHIT3 (zinc finger HIT-type containing 3)

Identity

Alias (NCBI)Hit1
PEHO
TRIP3
HGNC (Hugo) ZNHIT3
HGNC Previous nameTRIP3
HGNC Previous namethyroid hormone receptor interactor 3
 zinc finger, HIT type 3
LocusID (NCBI) 9326
Atlas_Id 76467
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 36486681 and ends at 36495821 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NAPB (20p11.21) / ZNHIT3 (17q12)ZNHIT3 (17q12) / ZNHIT3 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNHIT3   12309
Cards
Entrez_Gene (NCBI)ZNHIT3    zinc finger HIT-type containing 3
AliasesHit1; PEHO; TRIP3
GeneCards (Weizmann)ZNHIT3
Ensembl hg19 (Hinxton)ENSG00000273611 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273611 [Gene_View]  ENSG00000273611 [Sequence]  chr17:36486681-36495821 [Contig_View]  ZNHIT3 [Vega]
ICGC DataPortalENSG00000273611
TCGA cBioPortalZNHIT3
AceView (NCBI)ZNHIT3
Genatlas (Paris)ZNHIT3
SOURCE (Princeton)ZNHIT3
Genetics Home Reference (NIH)ZNHIT3
Genomic and cartography
GoldenPath hg38 (UCSC)ZNHIT3  -     chr17:36486681-36495821 +  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNHIT3  -     17q12   [Description]    (hg19-Feb_2009)
GoldenPathZNHIT3 - 17q12 [CytoView hg19]  ZNHIT3 - 17q12 [CytoView hg38]
ImmunoBaseENSG00000273611
Genome Data Viewer NCBIZNHIT3 [Mapview hg19]  
OMIM260565   604500   
Gene and transcription
Genbank (Entrez)AB209193 AF400652 AK290858 AK308583 AK310022
RefSeq transcript (Entrez)NM_001033577 NM_001281432 NM_001281433 NM_001281434 NM_004773
Consensus coding sequences : CCDS (NCBI)ZNHIT3
Gene ExpressionZNHIT3 [ NCBI-GEO ]   ZNHIT3 [ EBI - ARRAY_EXPRESS ]   ZNHIT3 [ SEEK ]   ZNHIT3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNHIT3 [ Firebrowse - Broad ]
GenevisibleExpression of ZNHIT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9326
GTEX Portal (Tissue expression)ZNHIT3
Human Protein AtlasENSG00000273611-ZNHIT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15649   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15649  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15649
PhosPhoSitePlusQ15649
Domaine pattern : Prosite (Expaxy)ZF_HIT (PS51083)   
Domains : Interpro (EBI)Znf_HIT    ZNHIT3   
Domain families : Pfam (Sanger)zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04438   
Conserved Domain (NCBI)ZNHIT3
PDB (RSDB)2YQQ    5L85   
PDB Europe2YQQ    5L85   
PDB (PDBSum)2YQQ    5L85   
PDB (IMB)2YQQ    5L85   
Structural Biology KnowledgeBase2YQQ    5L85   
SCOP (Structural Classification of Proteins)2YQQ    5L85   
CATH (Classification of proteins structures)2YQQ    5L85   
SuperfamilyQ15649
AlphaFold pdb e-kbQ15649   
Human Protein Atlas [tissue]ENSG00000273611-ZNHIT3 [tissue]
HPRD05139
Protein Interaction databases
DIP (DOE-UCLA)Q15649
IntAct (EBI)Q15649
BioGRIDZNHIT3
STRING (EMBL)ZNHIT3
ZODIACZNHIT3
Ontologies - Pathways
QuickGOQ15649
Ontology : AmiGOmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  box C/D snoRNP assembly  protein binding  nucleus  nucleus  cytoplasm  regulation of transcription, DNA-templated  metal ion binding  thyroid hormone receptor binding  snoRNA localization  pre-snoRNP complex  
Ontology : EGO-EBImaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  box C/D snoRNP assembly  protein binding  nucleus  nucleus  cytoplasm  regulation of transcription, DNA-templated  metal ion binding  thyroid hormone receptor binding  snoRNA localization  pre-snoRNP complex  
NDEx NetworkZNHIT3
Atlas of Cancer Signalling NetworkZNHIT3
Wikipedia pathwaysZNHIT3
Orthology - Evolution
OrthoDB9326
GeneTree (enSembl)ENSG00000273611
Phylogenetic Trees/Animal Genes : TreeFamZNHIT3
Homologs : HomoloGeneZNHIT3
Homology/Alignments : Family Browser (UCSC)ZNHIT3
Gene fusions - Rearrangements
Fusion : QuiverZNHIT3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNHIT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNHIT3
dbVarZNHIT3
ClinVarZNHIT3
MonarchZNHIT3
1000_GenomesZNHIT3 
Exome Variant ServerZNHIT3
GNOMAD BrowserENSG00000273611
Varsome BrowserZNHIT3
ACMGZNHIT3 variants
VarityQ15649
Genomic Variants (DGV)ZNHIT3 [DGVbeta]
DECIPHERZNHIT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNHIT3 
Mutations
ICGC Data PortalZNHIT3 
TCGA Data PortalZNHIT3 
Broad Tumor PortalZNHIT3
OASIS PortalZNHIT3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNHIT3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNHIT3
DgiDB (Drug Gene Interaction Database)ZNHIT3
DoCM (Curated mutations)ZNHIT3
CIViC (Clinical Interpretations of Variants in Cancer)ZNHIT3
Cancer3DZNHIT3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM260565    604500   
Orphanet
DisGeNETZNHIT3
MedgenZNHIT3
Genetic Testing Registry ZNHIT3
NextProtQ15649 [Medical]
GENETestsZNHIT3
Target ValidationZNHIT3
Huge Navigator ZNHIT3 [HugePedia]
ClinGenZNHIT3
Clinical trials, drugs, therapy
MyCancerGenomeZNHIT3
Protein Interactions : CTDZNHIT3
Pharm GKB GenePA36987
PharosQ15649
Clinical trialZNHIT3
Miscellaneous
canSAR (ICR)ZNHIT3
HarmonizomeZNHIT3
DataMed IndexZNHIT3
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNHIT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:43 CEST 2021

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