Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNHIT6 (zinc finger, HIT-type containing 6)

Identity

Alias_namesC1orf181
chromosome 1 open reading frame 181
zinc finger, HIT type 6
Alias_symbol (synonym)FLJ20729
NY-BR-75
BCD1
Other alias
HGNC (Hugo) ZNHIT6
LocusID (NCBI) 54680
Atlas_Id 76468
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 86115106 and ends at 86174116 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DDAH1 (1p22.3) / ZNHIT6 (1p22.3)SLC20A2 (8p11.21) / ZNHIT6 (1p22.3)ZNHIT6 (1p22.3) / ANKRD26 (10p12.1)
ZNHIT6 (1p22.3) / ISG20 (15q26.1)ZNHIT6 (1p22.3) / ZNF718 (4p16.3)ZNHIT6 (1p22.3) / ZNHIT6 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNHIT6   26089
Cards
Entrez_Gene (NCBI)ZNHIT6  54680  zinc finger, HIT-type containing 6
AliasesBCD1; C1orf181; NY-BR-75
GeneCards (Weizmann)ZNHIT6
Ensembl hg19 (Hinxton)ENSG00000117174 [Gene_View]  chr1:86115106-86174116 [Contig_View]  ZNHIT6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117174 [Gene_View]  chr1:86115106-86174116 [Contig_View]  ZNHIT6 [Vega]
ICGC DataPortalENSG00000117174
TCGA cBioPortalZNHIT6
AceView (NCBI)ZNHIT6
Genatlas (Paris)ZNHIT6
WikiGenes54680
SOURCE (Princeton)ZNHIT6
Genetics Home Reference (NIH)ZNHIT6
Genomic and cartography
GoldenPath hg19 (UCSC)ZNHIT6  -     chr1:86115106-86174116 -  1p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNHIT6  -     1p22.3   [Description]    (hg38-Dec_2013)
EnsemblZNHIT6 - 1p22.3 [CytoView hg19]  ZNHIT6 - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBIZNHIT6 [Mapview hg19]  ZNHIT6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF308296 AK000736 AK000767 AK022664 AK298149
RefSeq transcript (Entrez)NM_001170670 NM_017953
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ZNHIT6
Cluster EST : UnigeneHs.5111 [ NCBI ]
CGAP (NCI)Hs.5111
Alternative Splicing GalleryENSG00000117174
Gene ExpressionZNHIT6 [ NCBI-GEO ]   ZNHIT6 [ EBI - ARRAY_EXPRESS ]   ZNHIT6 [ SEEK ]   ZNHIT6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNHIT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54680
GTEX Portal (Tissue expression)ZNHIT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWK9
Splice isoforms : SwissVarQ9NWK9
PhosPhoSitePlusQ9NWK9
Domaine pattern : Prosite (Expaxy)ZF_HIT (PS51083)   
Domains : Interpro (EBI)Znf_HIT   
Domain families : Pfam (Sanger)zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04438   
Conserved Domain (NCBI)ZNHIT6
DMDM Disease mutations54680
Blocks (Seattle)ZNHIT6
SuperfamilyQ9NWK9
Human Protein AtlasENSG00000117174
Peptide AtlasQ9NWK9
HPRD08630
IPIIPI00100468   IPI00909739   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWK9
IntAct (EBI)Q9NWK9
FunCoupENSG00000117174
BioGRIDZNHIT6
STRING (EMBL)ZNHIT6
ZODIACZNHIT6
Ontologies - Pathways
QuickGOQ9NWK9
Ontology : AmiGObox C/D snoRNP assembly  protein binding  enzyme binding  ribosome biogenesis  identical protein binding  metal ion binding  extracellular exosome  pre-snoRNP complex  
Ontology : EGO-EBIbox C/D snoRNP assembly  protein binding  enzyme binding  ribosome biogenesis  identical protein binding  metal ion binding  extracellular exosome  pre-snoRNP complex  
NDEx NetworkZNHIT6
Atlas of Cancer Signalling NetworkZNHIT6
Wikipedia pathwaysZNHIT6
Orthology - Evolution
OrthoDB54680
GeneTree (enSembl)ENSG00000117174
Phylogenetic Trees/Animal Genes : TreeFamZNHIT6
HOVERGENQ9NWK9
HOGENOMQ9NWK9
Homologs : HomoloGeneZNHIT6
Homology/Alignments : Family Browser (UCSC)ZNHIT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNHIT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNHIT6
dbVarZNHIT6
ClinVarZNHIT6
1000_GenomesZNHIT6 
Exome Variant ServerZNHIT6
ExAC (Exome Aggregation Consortium)ZNHIT6 (select the gene name)
Genetic variants : HAPMAP54680
Genomic Variants (DGV)ZNHIT6 [DGVbeta]
DECIPHER (Syndromes)1:86115106-86174116  ENSG00000117174
CONAN: Copy Number AnalysisZNHIT6 
Mutations
ICGC Data PortalZNHIT6 
TCGA Data PortalZNHIT6 
Broad Tumor PortalZNHIT6
OASIS PortalZNHIT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNHIT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNHIT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNHIT6
DgiDB (Drug Gene Interaction Database)ZNHIT6
DoCM (Curated mutations)ZNHIT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNHIT6 (select a term)
intoGenZNHIT6
Cancer3DZNHIT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNHIT6
Genetic Testing Registry ZNHIT6
NextProtQ9NWK9 [Medical]
TSGene54680
GENETestsZNHIT6
Huge Navigator ZNHIT6 [HugePedia]
snp3D : Map Gene to Disease54680
BioCentury BCIQZNHIT6
ClinGenZNHIT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54680
Chemical/Pharm GKB GenePA162410929
Clinical trialZNHIT6
Miscellaneous
canSAR (ICR)ZNHIT6 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNHIT6
EVEXZNHIT6
GoPubMedZNHIT6
iHOPZNHIT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:54:08 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.