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ZNHIT6 (zinc finger HIT-type containing 6)

Identity

Alias (NCBI)BCD1
C1orf181
NY-BR-75
HGNC (Hugo) ZNHIT6
HGNC Alias symbFLJ20729
NY-BR-75
BCD1
HGNC Alias namebox C/D snoRNA essential 1 homolog (S. cerevisiae)
HGNC Previous nameC1orf181
HGNC Previous namechromosome 1 open reading frame 181
 zinc finger, HIT type 6
LocusID (NCBI) 54680
Atlas_Id 76468
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 85649417 and ends at 85708433 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DDAH1 (1p22.3) / ZNHIT6 (1p22.3)SLC20A2 (8p11.21) / ZNHIT6 (1p22.3)ZNHIT6 (1p22.3) / ANKRD26 (10p12.1)
ZNHIT6 (1p22.3) / ISG20 (15q26.1)ZNHIT6 (1p22.3) / ZNF718 (4p16.3)ZNHIT6 (1p22.3) / ZNHIT6 (1p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNHIT6   26089
Cards
Entrez_Gene (NCBI)ZNHIT6    zinc finger HIT-type containing 6
AliasesBCD1; C1orf181; NY-BR-75
GeneCards (Weizmann)ZNHIT6
Ensembl hg19 (Hinxton)ENSG00000117174 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000117174 [Gene_View]  ENSG00000117174 [Sequence]  chr1:85649417-85708433 [Contig_View]  ZNHIT6 [Vega]
ICGC DataPortalENSG00000117174
TCGA cBioPortalZNHIT6
AceView (NCBI)ZNHIT6
Genatlas (Paris)ZNHIT6
SOURCE (Princeton)ZNHIT6
Genetics Home Reference (NIH)ZNHIT6
Genomic and cartography
GoldenPath hg38 (UCSC)ZNHIT6  -     chr1:85649417-85708433 -  1p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNHIT6  -     1p22.3   [Description]    (hg19-Feb_2009)
GoldenPathZNHIT6 - 1p22.3 [CytoView hg19]  ZNHIT6 - 1p22.3 [CytoView hg38]
ImmunoBaseENSG00000117174
Genome Data Viewer NCBIZNHIT6 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF308296 AK000736 AK000767 AK022664 AK298149
RefSeq transcript (Entrez)NM_001170670 NM_017953
Consensus coding sequences : CCDS (NCBI)ZNHIT6
Gene ExpressionZNHIT6 [ NCBI-GEO ]   ZNHIT6 [ EBI - ARRAY_EXPRESS ]   ZNHIT6 [ SEEK ]   ZNHIT6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNHIT6 [ Firebrowse - Broad ]
GenevisibleExpression of ZNHIT6 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54680
GTEX Portal (Tissue expression)ZNHIT6
Human Protein AtlasENSG00000117174-ZNHIT6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWK9
PhosPhoSitePlusQ9NWK9
Domaine pattern : Prosite (Expaxy)ZF_HIT (PS51083)   
Domains : Interpro (EBI)Znf_HIT   
Domain families : Pfam (Sanger)zf-HIT (PF04438)   
Domain families : Pfam (NCBI)pfam04438   
Conserved Domain (NCBI)ZNHIT6
SuperfamilyQ9NWK9
AlphaFold pdb e-kbQ9NWK9   
Human Protein Atlas [tissue]ENSG00000117174-ZNHIT6 [tissue]
HPRD08630
Protein Interaction databases
DIP (DOE-UCLA)Q9NWK9
IntAct (EBI)Q9NWK9
BioGRIDZNHIT6
STRING (EMBL)ZNHIT6
ZODIACZNHIT6
Ontologies - Pathways
QuickGOQ9NWK9
Ontology : AmiGOmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  box C/D snoRNP assembly  box C/D snoRNP assembly  TFIID-class transcription factor complex binding  protein binding  nucleus  enzyme binding  identical protein binding  metal ion binding  snoRNA localization  snoRNA localization  ATPase binding  protein complex oligomerization  extracellular exosome  pre-snoRNP complex  pre-snoRNP complex  
Ontology : EGO-EBImaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  box C/D snoRNP assembly  box C/D snoRNP assembly  TFIID-class transcription factor complex binding  protein binding  nucleus  enzyme binding  identical protein binding  metal ion binding  snoRNA localization  snoRNA localization  ATPase binding  protein complex oligomerization  extracellular exosome  pre-snoRNP complex  pre-snoRNP complex  
NDEx NetworkZNHIT6
Atlas of Cancer Signalling NetworkZNHIT6
Wikipedia pathwaysZNHIT6
Orthology - Evolution
OrthoDB54680
GeneTree (enSembl)ENSG00000117174
Phylogenetic Trees/Animal Genes : TreeFamZNHIT6
Homologs : HomoloGeneZNHIT6
Homology/Alignments : Family Browser (UCSC)ZNHIT6
Gene fusions - Rearrangements
Fusion : QuiverZNHIT6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNHIT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNHIT6
dbVarZNHIT6
ClinVarZNHIT6
MonarchZNHIT6
1000_GenomesZNHIT6 
Exome Variant ServerZNHIT6
GNOMAD BrowserENSG00000117174
Varsome BrowserZNHIT6
ACMGZNHIT6 variants
VarityQ9NWK9
Genomic Variants (DGV)ZNHIT6 [DGVbeta]
DECIPHERZNHIT6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNHIT6 
Mutations
ICGC Data PortalZNHIT6 
TCGA Data PortalZNHIT6 
Broad Tumor PortalZNHIT6
OASIS PortalZNHIT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNHIT6  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNHIT6
Mutations and Diseases : HGMDZNHIT6
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNHIT6
DgiDB (Drug Gene Interaction Database)ZNHIT6
DoCM (Curated mutations)ZNHIT6
CIViC (Clinical Interpretations of Variants in Cancer)ZNHIT6
Cancer3DZNHIT6
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNHIT6
MedgenZNHIT6
Genetic Testing Registry ZNHIT6
NextProtQ9NWK9 [Medical]
GENETestsZNHIT6
Target ValidationZNHIT6
Huge Navigator ZNHIT6 [HugePedia]
ClinGenZNHIT6
Clinical trials, drugs, therapy
MyCancerGenomeZNHIT6
Protein Interactions : CTDZNHIT6
Pharm GKB GenePA162410929
PharosQ9NWK9
Clinical trialZNHIT6
Miscellaneous
canSAR (ICR)ZNHIT6
HarmonizomeZNHIT6
DataMed IndexZNHIT6
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNHIT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:30:43 CEST 2021

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