Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNRD1-AS1 (ZNRD1 antisense RNA 1)

Identity

Other aliasC6orf12
HTEX4
NCRNA00171
TCTEX4
ZNRD1-AS
ZNRD1AS
ZNRD1AS1
HGNC (Hugo) ZNRD1-AS1
LocusID (NCBI) 80862
Atlas_Id 76469
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29968788 and ends at 30028961 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNRD1-AS1   13924
Cards
Entrez_Gene (NCBI)ZNRD1-AS1  80862  ZNRD1 antisense RNA 1
AliasesC6orf12; HTEX4; NCRNA00171; TCTEX4; 
ZNRD1-AS; ZNRD1AS; ZNRD1AS1
GeneCards (Weizmann)ZNRD1-AS1
Ensembl hg19 (Hinxton)ENSG00000204623 [Gene_View]  chr6:29968788-30028961 [Contig_View]  ZNRD1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204623 [Gene_View]  chr6:29968788-30028961 [Contig_View]  ZNRD1-AS1 [Vega]
ICGC DataPortalENSG00000204623
TCGA cBioPortalZNRD1-AS1
AceView (NCBI)ZNRD1-AS1
Genatlas (Paris)ZNRD1-AS1
WikiGenes80862
SOURCE (Princeton)ZNRD1-AS1
Genetics Home Reference (NIH)ZNRD1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)ZNRD1-AS1  -     chr6:29968788-30028961 -  6p22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNRD1-AS1  -     6p22.1   [Description]    (hg38-Dec_2013)
EnsemblZNRD1-AS1 - 6p22.1 [CytoView hg19]  ZNRD1-AS1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNRD1-AS1 [Mapview hg19]  ZNRD1-AS1 [Mapview hg38]
OMIM615714   
Gene and transcription
Genbank (Entrez)AF032109 AF032110 AF032111 AF238323 AK126001
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_004929326
Consensus coding sequences : CCDS (NCBI)ZNRD1-AS1
Cluster EST : UnigeneHs.653168 [ NCBI ]
CGAP (NCI)Hs.653168
Alternative Splicing GalleryENSG00000204623
Gene ExpressionZNRD1-AS1 [ NCBI-GEO ]   ZNRD1-AS1 [ EBI - ARRAY_EXPRESS ]   ZNRD1-AS1 [ SEEK ]   ZNRD1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNRD1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80862
GTEX Portal (Tissue expression)ZNRD1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2KJ03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2KJ03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2KJ03
Splice isoforms : SwissVarQ2KJ03
PhosPhoSitePlusQ2KJ03
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZNRD1-AS1
DMDM Disease mutations80862
Blocks (Seattle)ZNRD1-AS1
SuperfamilyQ2KJ03
Human Protein AtlasENSG00000204623
Peptide AtlasQ2KJ03
IPIIPI00477196   IPI00887335   IPI00445305   IPI00867605   
Protein Interaction databases
DIP (DOE-UCLA)Q2KJ03
IntAct (EBI)Q2KJ03
FunCoupENSG00000204623
BioGRIDZNRD1-AS1
STRING (EMBL)ZNRD1-AS1
ZODIACZNRD1-AS1
Ontologies - Pathways
QuickGOQ2KJ03
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkZNRD1-AS1
Atlas of Cancer Signalling NetworkZNRD1-AS1
Wikipedia pathwaysZNRD1-AS1
Orthology - Evolution
OrthoDB80862
GeneTree (enSembl)ENSG00000204623
Phylogenetic Trees/Animal Genes : TreeFamZNRD1-AS1
HOVERGENQ2KJ03
HOGENOMQ2KJ03
Homologs : HomoloGeneZNRD1-AS1
Homology/Alignments : Family Browser (UCSC)ZNRD1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNRD1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNRD1-AS1
dbVarZNRD1-AS1
ClinVarZNRD1-AS1
1000_GenomesZNRD1-AS1 
Exome Variant ServerZNRD1-AS1
ExAC (Exome Aggregation Consortium)ZNRD1-AS1 (select the gene name)
Genetic variants : HAPMAP80862
Genomic Variants (DGV)ZNRD1-AS1 [DGVbeta]
DECIPHER (Syndromes)6:29968788-30028961  ENSG00000204623
CONAN: Copy Number AnalysisZNRD1-AS1 
Mutations
ICGC Data PortalZNRD1-AS1 
TCGA Data PortalZNRD1-AS1 
Broad Tumor PortalZNRD1-AS1
OASIS PortalZNRD1-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNRD1-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNRD1-AS1
DgiDB (Drug Gene Interaction Database)ZNRD1-AS1
DoCM (Curated mutations)ZNRD1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNRD1-AS1 (select a term)
intoGenZNRD1-AS1
Cancer3DZNRD1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615714   
Orphanet
MedgenZNRD1-AS1
Genetic Testing Registry ZNRD1-AS1
NextProtQ2KJ03 [Medical]
TSGene80862
GENETestsZNRD1-AS1
Huge Navigator ZNRD1-AS1 [HugePedia]
snp3D : Map Gene to Disease80862
BioCentury BCIQZNRD1-AS1
ClinGenZNRD1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80862
Chemical/Pharm GKB GenePA165618433
Clinical trialZNRD1-AS1
Miscellaneous
canSAR (ICR)ZNRD1-AS1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNRD1-AS1
EVEXZNRD1-AS1
GoPubMedZNRD1-AS1
iHOPZNRD1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:54:08 CET 2017

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