Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNRD1 (zinc ribbon domain containing 1)

Identity

Alias_nameszinc ribbon domain containing
Alias_symbol (synonym)hZR14
HTEX-6
tctex-6
RPA12
Other aliasHTEX6
Rpa12
TCTEX6
TEX6
ZR14
HGNC (Hugo) ZNRD1
LocusID (NCBI) 30834
Atlas_Id 43588
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30061240 and ends at 30064909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNRD1   13182
Cards
Entrez_Gene (NCBI)ZNRD1  30834  zinc ribbon domain containing 1
AliasesHTEX-6; HTEX6; Rpa12; TCTEX6; 
TEX6; ZR14; hZR14; tctex-6
GeneCards (Weizmann)ZNRD1
Ensembl hg19 (Hinxton)ENSG00000066379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066379 [Gene_View]  ENSG00000066379 [Sequence]  chr6:30061240-30064909 [Contig_View]  ZNRD1 [Vega]
ICGC DataPortalENSG00000066379
TCGA cBioPortalZNRD1
AceView (NCBI)ZNRD1
Genatlas (Paris)ZNRD1
WikiGenes30834
SOURCE (Princeton)ZNRD1
Genetics Home Reference (NIH)ZNRD1
Genomic and cartography
GoldenPath hg38 (UCSC)ZNRD1  -     chr6:30061240-30064909 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNRD1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNRD1 - 6p22.1 [CytoView hg19]  ZNRD1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNRD1 [Mapview hg19]  ZNRD1 [Mapview hg38]
OMIM607525   
Gene and transcription
Genbank (Entrez)AF024616 AF024617 AF230337 AF238320 AF238321
RefSeq transcript (Entrez)NM_001278785 NM_001278786 NM_014596 NM_170783
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)ZNRD1
Cluster EST : UnigeneHs.57813 [ NCBI ]
CGAP (NCI)Hs.57813
Alternative Splicing GalleryENSG00000066379
Gene ExpressionZNRD1 [ NCBI-GEO ]   ZNRD1 [ EBI - ARRAY_EXPRESS ]   ZNRD1 [ SEEK ]   ZNRD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNRD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)30834
GTEX Portal (Tissue expression)ZNRD1
Human Protein AtlasENSG00000066379-ZNRD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1U0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1U0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1U0
Splice isoforms : SwissVarQ9P1U0
PhosPhoSitePlusQ9P1U0
Domaine pattern : Prosite (Expaxy)RNA_POL_M_15KD (PS01030)    ZF_TFIIS_1 (PS00466)    ZF_TFIIS_2 (PS51133)   
Domains : Interpro (EBI)DNA-dir_RNA_pol-M_15_CS    Rpa12/Rpb9/Rpc10/TFS    Zn_ribbon_RPA12_C    Znf_TFIIS   
Domain families : Pfam (Sanger)TFIIS_C (PF01096)   
Domain families : Pfam (NCBI)pfam01096   
Domain families : Smart (EMBL)ZnF_C2C2 (SM00440)  
Conserved Domain (NCBI)ZNRD1
DMDM Disease mutations30834
Blocks (Seattle)ZNRD1
SuperfamilyQ9P1U0
Human Protein Atlas [tissue]ENSG00000066379-ZNRD1 [tissue]
Peptide AtlasQ9P1U0
HPRD09601
IPIIPI00395539   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1U0
IntAct (EBI)Q9P1U0
FunCoupENSG00000066379
BioGRIDZNRD1
STRING (EMBL)ZNRD1
ZODIACZNRD1
Ontologies - Pathways
QuickGOQ9P1U0
Ontology : AmiGORNA polymerase I activity  nucleic acid binding  DNA-directed 5'-3' RNA polymerase activity  nucleoplasm  RNA polymerase I complex  nucleobase-containing compound metabolic process  transcription initiation from RNA polymerase I promoter  termination of RNA polymerase I transcription  termination of RNA polymerase I transcription  mRNA cleavage  zinc ion binding  positive regulation of gene expression, epigenetic  
Ontology : EGO-EBIRNA polymerase I activity  nucleic acid binding  DNA-directed 5'-3' RNA polymerase activity  nucleoplasm  RNA polymerase I complex  nucleobase-containing compound metabolic process  transcription initiation from RNA polymerase I promoter  termination of RNA polymerase I transcription  termination of RNA polymerase I transcription  mRNA cleavage  zinc ion binding  positive regulation of gene expression, epigenetic  
Pathways : KEGGPurine metabolism    Pyrimidine metabolism    RNA polymerase   
NDEx NetworkZNRD1
Atlas of Cancer Signalling NetworkZNRD1
Wikipedia pathwaysZNRD1
Orthology - Evolution
OrthoDB30834
GeneTree (enSembl)ENSG00000066379
Phylogenetic Trees/Animal Genes : TreeFamZNRD1
HOVERGENQ9P1U0
HOGENOMQ9P1U0
Homologs : HomoloGeneZNRD1
Homology/Alignments : Family Browser (UCSC)ZNRD1
Gene fusions - Rearrangements
Fusion : QuiverZNRD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNRD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNRD1
dbVarZNRD1
ClinVarZNRD1
1000_GenomesZNRD1 
Exome Variant ServerZNRD1
ExAC (Exome Aggregation Consortium)ENSG00000066379
GNOMAD BrowserENSG00000066379
Varsome BrowserZNRD1
Genetic variants : HAPMAP30834
Genomic Variants (DGV)ZNRD1 [DGVbeta]
DECIPHERZNRD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNRD1 
Mutations
ICGC Data PortalZNRD1 
TCGA Data PortalZNRD1 
Broad Tumor PortalZNRD1
OASIS PortalZNRD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNRD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNRD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNRD1
DgiDB (Drug Gene Interaction Database)ZNRD1
DoCM (Curated mutations)ZNRD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNRD1 (select a term)
intoGenZNRD1
Cancer3DZNRD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607525   
Orphanet
DisGeNETZNRD1
MedgenZNRD1
Genetic Testing Registry ZNRD1
NextProtQ9P1U0 [Medical]
TSGene30834
GENETestsZNRD1
Target ValidationZNRD1
Huge Navigator ZNRD1 [HugePedia]
snp3D : Map Gene to Disease30834
BioCentury BCIQZNRD1
ClinGenZNRD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD30834
Chemical/Pharm GKB GenePA37754
Clinical trialZNRD1
Miscellaneous
canSAR (ICR)ZNRD1 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNRD1
EVEXZNRD1
GoPubMedZNRD1
iHOPZNRD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 6 11:51:50 CET 2018

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