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ZNRF4 (zinc and ring finger 4)

Identity

Alias_symbol (synonym)spzn
Ssrzf1
RNF204
Other aliasSPERIZIN
HGNC (Hugo) ZNRF4
LocusID (NCBI) 148066
Atlas_Id 54819
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 5455415 and ends at 5456856 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNRF4 (19p13.3) / AP3D1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNRF4   17726
Cards
Entrez_Gene (NCBI)ZNRF4  148066  zinc and ring finger 4
AliasesRNF204; SPERIZIN; Ssrzf1; spzn
GeneCards (Weizmann)ZNRF4
Ensembl hg19 (Hinxton)ENSG00000105428 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105428 [Gene_View]  chr19:5455415-5456856 [Contig_View]  ZNRF4 [Vega]
ICGC DataPortalENSG00000105428
TCGA cBioPortalZNRF4
AceView (NCBI)ZNRF4
Genatlas (Paris)ZNRF4
WikiGenes148066
SOURCE (Princeton)ZNRF4
Genetics Home Reference (NIH)ZNRF4
Genomic and cartography
GoldenPath hg38 (UCSC)ZNRF4  -     chr19:5455415-5456856 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNRF4  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblZNRF4 - 19p13.3 [CytoView hg19]  ZNRF4 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZNRF4 [Mapview hg19]  ZNRF4 [Mapview hg38]
OMIM612063   
Gene and transcription
Genbank (Entrez)AK098722 AK292251 BC017592
RefSeq transcript (Entrez)NM_181710
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNRF4
Cluster EST : UnigeneHs.126496 [ NCBI ]
CGAP (NCI)Hs.126496
Alternative Splicing GalleryENSG00000105428
Gene ExpressionZNRF4 [ NCBI-GEO ]   ZNRF4 [ EBI - ARRAY_EXPRESS ]   ZNRF4 [ SEEK ]   ZNRF4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNRF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148066
GTEX Portal (Tissue expression)ZNRF4
Human Protein AtlasENSG00000105428-ZNRF4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWF5
Splice isoforms : SwissVarQ8WWF5
PhosPhoSitePlusQ8WWF5
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)PA_domain    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PA (PF02225)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam02225    pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)ZNRF4
DMDM Disease mutations148066
Blocks (Seattle)ZNRF4
SuperfamilyQ8WWF5
Human Protein Atlas [tissue]ENSG00000105428-ZNRF4 [tissue]
Peptide AtlasQ8WWF5
HPRD15895
IPIIPI00328204   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWF5
IntAct (EBI)Q8WWF5
FunCoupENSG00000105428
BioGRIDZNRF4
STRING (EMBL)ZNRF4
ZODIACZNRF4
Ontologies - Pathways
QuickGOQ8WWF5
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  zinc ion binding  integral component of membrane  transferase activity  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  zinc ion binding  integral component of membrane  transferase activity  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  
NDEx NetworkZNRF4
Atlas of Cancer Signalling NetworkZNRF4
Wikipedia pathwaysZNRF4
Orthology - Evolution
OrthoDB148066
GeneTree (enSembl)ENSG00000105428
Phylogenetic Trees/Animal Genes : TreeFamZNRF4
HOVERGENQ8WWF5
HOGENOMQ8WWF5
Homologs : HomoloGeneZNRF4
Homology/Alignments : Family Browser (UCSC)ZNRF4
Gene fusions - Rearrangements
Fusion : MitelmanZNRF4/AP3D1 [19p13.3/19p13.3]  
Tumor Fusion PortalZNRF4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNRF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNRF4
dbVarZNRF4
ClinVarZNRF4
1000_GenomesZNRF4 
Exome Variant ServerZNRF4
ExAC (Exome Aggregation Consortium)ENSG00000105428
GNOMAD BrowserENSG00000105428
Genetic variants : HAPMAP148066
Genomic Variants (DGV)ZNRF4 [DGVbeta]
DECIPHERZNRF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNRF4 
Mutations
ICGC Data PortalZNRF4 
TCGA Data PortalZNRF4 
Broad Tumor PortalZNRF4
OASIS PortalZNRF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNRF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNRF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNRF4
DgiDB (Drug Gene Interaction Database)ZNRF4
DoCM (Curated mutations)ZNRF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNRF4 (select a term)
intoGenZNRF4
Cancer3DZNRF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612063   
Orphanet
DisGeNETZNRF4
MedgenZNRF4
Genetic Testing Registry ZNRF4
NextProtQ8WWF5 [Medical]
TSGene148066
GENETestsZNRF4
Target ValidationZNRF4
Huge Navigator ZNRF4 [HugePedia]
snp3D : Map Gene to Disease148066
BioCentury BCIQZNRF4
ClinGenZNRF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148066
Chemical/Pharm GKB GenePA134943871
Clinical trialZNRF4
Miscellaneous
canSAR (ICR)ZNRF4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNRF4
EVEXZNRF4
GoPubMedZNRF4
iHOPZNRF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:42:47 CET 2017

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