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ZPBP (zona pellucida binding protein)

Identity

Alias_symbol (synonym)SP38
ZPBP1
Other alias
HGNC (Hugo) ZPBP
LocusID (NCBI) 11055
Atlas_Id 76479
Location 7p12.2  [Link to chromosome band 7p12]
Location_base_pair Starts at 49937428 and ends at 50093264 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZPBP (7p12.2) / LUM (12q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZPBP   15662
Cards
Entrez_Gene (NCBI)ZPBP  11055  zona pellucida binding protein
AliasesZPBP1
GeneCards (Weizmann)ZPBP
Ensembl hg19 (Hinxton)ENSG00000042813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000042813 [Gene_View]  chr7:49937428-50093264 [Contig_View]  ZPBP [Vega]
ICGC DataPortalENSG00000042813
TCGA cBioPortalZPBP
AceView (NCBI)ZPBP
Genatlas (Paris)ZPBP
WikiGenes11055
SOURCE (Princeton)ZPBP
Genetics Home Reference (NIH)ZPBP
Genomic and cartography
GoldenPath hg38 (UCSC)ZPBP  -     chr7:49937428-50093264 -  7p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZPBP  -     7p12.2   [Description]    (hg19-Feb_2009)
EnsemblZPBP - 7p12.2 [CytoView hg19]  ZPBP - 7p12.2 [CytoView hg38]
Mapping of homologs : NCBIZPBP [Mapview hg19]  ZPBP [Mapview hg38]
OMIM608498   
Gene and transcription
Genbank (Entrez)AI207093 AK312799 BC005223 BT006822 D17570
RefSeq transcript (Entrez)NM_001159878 NM_007009
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZPBP
Cluster EST : UnigeneHs.388841 [ NCBI ]
CGAP (NCI)Hs.388841
Alternative Splicing GalleryENSG00000042813
Gene ExpressionZPBP [ NCBI-GEO ]   ZPBP [ EBI - ARRAY_EXPRESS ]   ZPBP [ SEEK ]   ZPBP [ MEM ]
Gene Expression Viewer (FireBrowse)ZPBP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11055
GTEX Portal (Tissue expression)ZPBP
Human Protein AtlasENSG00000042813-ZPBP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BS86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BS86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BS86
Splice isoforms : SwissVarQ9BS86
PhosPhoSitePlusQ9BS86
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Sp38-bd   
Domain families : Pfam (Sanger)Sp38 (PF07354)   
Domain families : Pfam (NCBI)pfam07354   
Conserved Domain (NCBI)ZPBP
DMDM Disease mutations11055
Blocks (Seattle)ZPBP
SuperfamilyQ9BS86
Human Protein Atlas [tissue]ENSG00000042813-ZPBP [tissue]
Peptide AtlasQ9BS86
HPRD18364
IPIIPI00013006   IPI00926275   IPI00927932   IPI00927625   
Protein Interaction databases
DIP (DOE-UCLA)Q9BS86
IntAct (EBI)Q9BS86
FunCoupENSG00000042813
BioGRIDZPBP
STRING (EMBL)ZPBP
ZODIACZPBP
Ontologies - Pathways
QuickGOQ9BS86
Ontology : AmiGOacrosomal membrane  extracellular region  nucleus  binding of sperm to zona pellucida  
Ontology : EGO-EBIacrosomal membrane  extracellular region  nucleus  binding of sperm to zona pellucida  
NDEx NetworkZPBP
Atlas of Cancer Signalling NetworkZPBP
Wikipedia pathwaysZPBP
Orthology - Evolution
OrthoDB11055
GeneTree (enSembl)ENSG00000042813
Phylogenetic Trees/Animal Genes : TreeFamZPBP
HOVERGENQ9BS86
HOGENOMQ9BS86
Homologs : HomoloGeneZPBP
Homology/Alignments : Family Browser (UCSC)ZPBP
Gene fusions - Rearrangements
Fusion: Tumor Portal ZPBP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZPBP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZPBP
dbVarZPBP
ClinVarZPBP
1000_GenomesZPBP 
Exome Variant ServerZPBP
ExAC (Exome Aggregation Consortium)ENSG00000042813
GNOMAD BrowserENSG00000042813
Genetic variants : HAPMAP11055
Genomic Variants (DGV)ZPBP [DGVbeta]
DECIPHERZPBP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZPBP 
Mutations
ICGC Data PortalZPBP 
TCGA Data PortalZPBP 
Broad Tumor PortalZPBP
OASIS PortalZPBP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZPBP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZPBP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZPBP
DgiDB (Drug Gene Interaction Database)ZPBP
DoCM (Curated mutations)ZPBP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZPBP (select a term)
intoGenZPBP
Cancer3DZPBP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608498   
Orphanet
MedgenZPBP
Genetic Testing Registry ZPBP
NextProtQ9BS86 [Medical]
TSGene11055
GENETestsZPBP
Target ValidationZPBP
Huge Navigator ZPBP [HugePedia]
snp3D : Map Gene to Disease11055
BioCentury BCIQZPBP
ClinGenZPBP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11055
Chemical/Pharm GKB GenePA38013
Clinical trialZPBP
Miscellaneous
canSAR (ICR)ZPBP (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZPBP
EVEXZPBP
GoPubMedZPBP
iHOPZPBP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:38:13 CET 2017

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