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ZPBP2 (zona pellucida binding protein 2)

Identity

Alias_symbol (synonym)ZPBPL
MGC41930
Other alias
HGNC (Hugo) ZPBP2
LocusID (NCBI) 124626
Atlas_Id 76480
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 38024455 and ends at 38034149 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ORMDL3 (17q12) / ZPBP2 (17q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZPBP2   20678
Cards
Entrez_Gene (NCBI)ZPBP2  124626  zona pellucida binding protein 2
AliasesZPBPL
GeneCards (Weizmann)ZPBP2
Ensembl hg19 (Hinxton)ENSG00000186075 [Gene_View]  chr17:38024455-38034149 [Contig_View]  ZPBP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000186075 [Gene_View]  chr17:38024455-38034149 [Contig_View]  ZPBP2 [Vega]
ICGC DataPortalENSG00000186075
TCGA cBioPortalZPBP2
AceView (NCBI)ZPBP2
Genatlas (Paris)ZPBP2
WikiGenes124626
SOURCE (Princeton)ZPBP2
Genetics Home Reference (NIH)ZPBP2
Genomic and cartography
GoldenPath hg19 (UCSC)ZPBP2  -     chr17:38024455-38034149 +  17q12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZPBP2  -     17q12   [Description]    (hg38-Dec_2013)
EnsemblZPBP2 - 17q12 [CytoView hg19]  ZPBP2 - 17q12 [CytoView hg38]
Mapping of homologs : NCBIZPBP2 [Mapview hg19]  ZPBP2 [Mapview hg38]
OMIM608499   
Gene and transcription
Genbank (Entrez)AK292383 AY251603 AY251604 BC043152 DB056422
RefSeq transcript (Entrez)NM_198844 NM_199321
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)ZPBP2
Cluster EST : UnigeneHs.367245 [ NCBI ]
CGAP (NCI)Hs.367245
Alternative Splicing GalleryENSG00000186075
Gene ExpressionZPBP2 [ NCBI-GEO ]   ZPBP2 [ EBI - ARRAY_EXPRESS ]   ZPBP2 [ SEEK ]   ZPBP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZPBP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124626
GTEX Portal (Tissue expression)ZPBP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6X784   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6X784  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6X784
Splice isoforms : SwissVarQ6X784
PhosPhoSitePlusQ6X784
Domains : Interpro (EBI)Ig-like_dom    Sp38-bd   
Domain families : Pfam (Sanger)Sp38 (PF07354)   
Domain families : Pfam (NCBI)pfam07354   
Conserved Domain (NCBI)ZPBP2
DMDM Disease mutations124626
Blocks (Seattle)ZPBP2
SuperfamilyQ6X784
Human Protein AtlasENSG00000186075
Peptide AtlasQ6X784
HPRD18365
IPIIPI00394958   IPI00470445   
Protein Interaction databases
DIP (DOE-UCLA)Q6X784
IntAct (EBI)Q6X784
FunCoupENSG00000186075
BioGRIDZPBP2
STRING (EMBL)ZPBP2
ZODIACZPBP2
Ontologies - Pathways
QuickGOQ6X784
Ontology : AmiGOacrosomal vesicle  acrosome assembly  zona pellucida receptor complex  extracellular region  nucleus  binding of sperm to zona pellucida  cell body  
Ontology : EGO-EBIacrosomal vesicle  acrosome assembly  zona pellucida receptor complex  extracellular region  nucleus  binding of sperm to zona pellucida  cell body  
NDEx NetworkZPBP2
Atlas of Cancer Signalling NetworkZPBP2
Wikipedia pathwaysZPBP2
Orthology - Evolution
OrthoDB124626
GeneTree (enSembl)ENSG00000186075
Phylogenetic Trees/Animal Genes : TreeFamZPBP2
HOVERGENQ6X784
HOGENOMQ6X784
Homologs : HomoloGeneZPBP2
Homology/Alignments : Family Browser (UCSC)ZPBP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZPBP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZPBP2
dbVarZPBP2
ClinVarZPBP2
1000_GenomesZPBP2 
Exome Variant ServerZPBP2
ExAC (Exome Aggregation Consortium)ZPBP2 (select the gene name)
Genetic variants : HAPMAP124626
Genomic Variants (DGV)ZPBP2 [DGVbeta]
DECIPHER (Syndromes)17:38024455-38034149  ENSG00000186075
CONAN: Copy Number AnalysisZPBP2 
Mutations
ICGC Data PortalZPBP2 
TCGA Data PortalZPBP2 
Broad Tumor PortalZPBP2
OASIS PortalZPBP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZPBP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZPBP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZPBP2
DgiDB (Drug Gene Interaction Database)ZPBP2
DoCM (Curated mutations)ZPBP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZPBP2 (select a term)
intoGenZPBP2
Cancer3DZPBP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608499   
Orphanet
MedgenZPBP2
Genetic Testing Registry ZPBP2
NextProtQ6X784 [Medical]
TSGene124626
GENETestsZPBP2
Huge Navigator ZPBP2 [HugePedia]
snp3D : Map Gene to Disease124626
BioCentury BCIQZPBP2
ClinGenZPBP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124626
Chemical/Pharm GKB GenePA134894503
Clinical trialZPBP2
Miscellaneous
canSAR (ICR)ZPBP2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZPBP2
EVEXZPBP2
GoPubMedZPBP2
iHOPZPBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:11 CET 2017

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