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ZPLD1 (zona pellucida like domain containing 1)

Identity

Other alias-
HGNC (Hugo) ZPLD1
LocusID (NCBI) 131368
Atlas_Id 76481
Location 3q12.3  [Link to chromosome band 3q12]
Location_base_pair Starts at 102435015 and ends at 102479841 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZPLD1 (3q12.3) / NXPE3 (3q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZPLD1   27022
Cards
Entrez_Gene (NCBI)ZPLD1  131368  zona pellucida like domain containing 1
Aliases
GeneCards (Weizmann)ZPLD1
Ensembl hg19 (Hinxton)ENSG00000170044 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170044 [Gene_View]  chr3:102435015-102479841 [Contig_View]  ZPLD1 [Vega]
ICGC DataPortalENSG00000170044
TCGA cBioPortalZPLD1
AceView (NCBI)ZPLD1
Genatlas (Paris)ZPLD1
WikiGenes131368
SOURCE (Princeton)ZPLD1
Genetics Home Reference (NIH)ZPLD1
Genomic and cartography
GoldenPath hg38 (UCSC)ZPLD1  -     chr3:102435015-102479841 +  3q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZPLD1  -     3q12.3   [Description]    (hg19-Feb_2009)
EnsemblZPLD1 - 3q12.3 [CytoView hg19]  ZPLD1 - 3q12.3 [CytoView hg38]
Mapping of homologs : NCBIZPLD1 [Mapview hg19]  ZPLD1 [Mapview hg38]
OMIM615915   
Gene and transcription
Genbank (Entrez)AY090780 BC021279 BC031261 BC143817
RefSeq transcript (Entrez)NM_001329788 NM_175056
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZPLD1
Cluster EST : UnigeneHs.352213 [ NCBI ]
CGAP (NCI)Hs.352213
Alternative Splicing GalleryENSG00000170044
Gene ExpressionZPLD1 [ NCBI-GEO ]   ZPLD1 [ EBI - ARRAY_EXPRESS ]   ZPLD1 [ SEEK ]   ZPLD1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZPLD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)131368
GTEX Portal (Tissue expression)ZPLD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TCW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TCW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TCW7
Splice isoforms : SwissVarQ8TCW7
PhosPhoSitePlusQ8TCW7
Domaine pattern : Prosite (Expaxy)ZP_2 (PS51034)   
Domains : Interpro (EBI)ZP_dom   
Domain families : Pfam (Sanger)Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam00100   
Domain families : Smart (EMBL)ZP (SM00241)  
Conserved Domain (NCBI)ZPLD1
DMDM Disease mutations131368
Blocks (Seattle)ZPLD1
SuperfamilyQ8TCW7
Human Protein AtlasENSG00000170044
Peptide AtlasQ8TCW7
HPRD14048
IPIIPI00796010   IPI00152468   
Protein Interaction databases
DIP (DOE-UCLA)Q8TCW7
IntAct (EBI)Q8TCW7
FunCoupENSG00000170044
BioGRIDZPLD1
STRING (EMBL)ZPLD1
ZODIACZPLD1
Ontologies - Pathways
QuickGOQ8TCW7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkZPLD1
Atlas of Cancer Signalling NetworkZPLD1
Wikipedia pathwaysZPLD1
Orthology - Evolution
OrthoDB131368
GeneTree (enSembl)ENSG00000170044
Phylogenetic Trees/Animal Genes : TreeFamZPLD1
HOVERGENQ8TCW7
HOGENOMQ8TCW7
Homologs : HomoloGeneZPLD1
Homology/Alignments : Family Browser (UCSC)ZPLD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZPLD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZPLD1
dbVarZPLD1
ClinVarZPLD1
1000_GenomesZPLD1 
Exome Variant ServerZPLD1
ExAC (Exome Aggregation Consortium)ZPLD1 (select the gene name)
Genetic variants : HAPMAP131368
Genomic Variants (DGV)ZPLD1 [DGVbeta]
DECIPHERZPLD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZPLD1 
Mutations
ICGC Data PortalZPLD1 
TCGA Data PortalZPLD1 
Broad Tumor PortalZPLD1
OASIS PortalZPLD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZPLD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZPLD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZPLD1
DgiDB (Drug Gene Interaction Database)ZPLD1
DoCM (Curated mutations)ZPLD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZPLD1 (select a term)
intoGenZPLD1
Cancer3DZPLD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615915   
Orphanet
MedgenZPLD1
Genetic Testing Registry ZPLD1
NextProtQ8TCW7 [Medical]
TSGene131368
GENETestsZPLD1
Target ValidationZPLD1
Huge Navigator ZPLD1 [HugePedia]
snp3D : Map Gene to Disease131368
BioCentury BCIQZPLD1
ClinGenZPLD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD131368
Chemical/Pharm GKB GenePA142670472
Clinical trialZPLD1
Miscellaneous
canSAR (ICR)ZPLD1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZPLD1
EVEXZPLD1
GoPubMedZPLD1
iHOPZPLD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:32 CEST 2017

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