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ZPR1 (ZPR1 zinc finger)

Identity

Alias_namesZNF259
zinc finger protein 259
Other alias
HGNC (Hugo) ZPR1
LocusID (NCBI) 8882
Atlas_Id 56312
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 116648905 and ends at 116658754 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZPR1   13051
Cards
Entrez_Gene (NCBI)ZPR1  8882  ZPR1 zinc finger
AliasesZNF259
GeneCards (Weizmann)ZPR1
Ensembl hg19 (Hinxton)ENSG00000109917 [Gene_View]  chr11:116648905-116658754 [Contig_View]  ZPR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000109917 [Gene_View]  chr11:116648905-116658754 [Contig_View]  ZPR1 [Vega]
ICGC DataPortalENSG00000109917
TCGA cBioPortalZPR1
AceView (NCBI)ZPR1
Genatlas (Paris)ZPR1
WikiGenes8882
SOURCE (Princeton)ZPR1
Genetics Home Reference (NIH)ZPR1
Genomic and cartography
GoldenPath hg19 (UCSC)ZPR1  -     chr11:116648905-116658754 -  11q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZPR1  -     11q23.3   [Description]    (hg38-Dec_2013)
EnsemblZPR1 - 11q23.3 [CytoView hg19]  ZPR1 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBIZPR1 [Mapview hg19]  ZPR1 [Mapview hg38]
OMIM603901   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001317086 NM_003904
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZPR1
Cluster EST : UnigeneHs.7165 [ NCBI ]
CGAP (NCI)Hs.7165
Alternative Splicing GalleryENSG00000109917
Gene ExpressionZPR1 [ NCBI-GEO ]   ZPR1 [ EBI - ARRAY_EXPRESS ]   ZPR1 [ SEEK ]   ZPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8882
GTEX Portal (Tissue expression)ZPR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75312   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75312  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75312
Splice isoforms : SwissVarO75312
PhosPhoSitePlusO75312
Domains : Interpro (EBI)Znf_ZPR1   
Domain families : Pfam (Sanger)zf-ZPR1 (PF03367)   
Domain families : Pfam (NCBI)pfam03367   
Domain families : Smart (EMBL)Zpr1 (SM00709)  
Conserved Domain (NCBI)ZPR1
DMDM Disease mutations8882
Blocks (Seattle)ZPR1
SuperfamilyO75312
Human Protein AtlasENSG00000109917
Peptide AtlasO75312
HPRD04877
IPIIPI00025244   IPI00657912   IPI00657874   IPI00879280   IPI00894368   IPI00892962   
Protein Interaction databases
DIP (DOE-UCLA)O75312
IntAct (EBI)O75312
FunCoupENSG00000109917
BioGRIDZPR1
STRING (EMBL)ZPR1
ZODIACZPR1
Ontologies - Pathways
QuickGOO75312
Ontology : AmiGOmicrotubule cytoskeleton organization  inner cell mass cell proliferation  trophectodermal cell proliferation  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  mRNA processing  signal transduction  zinc ion binding  cell proliferation  RNA splicing  positive regulation of gene expression  Cajal body  spinal cord development  axon  axon  growth cone  Cajal body organization  Cajal body organization  receptor tyrosine kinase binding  translation initiation factor binding  regulation of myelination  SMN complex  positive regulation of RNA splicing  DNA endoreduplication  positive regulation of protein import into nucleus  neuronal cell body  perikaryon  positive regulation of growth  perinuclear region of cytoplasm  axon development  axon development  cellular response to epidermal growth factor stimulus  positive regulation of transcription involved in G1/S transition of mitotic cell cycle  Gemini of coiled bodies  apoptotic process involved in development  pre-mRNA catabolic process  negative regulation of motor neuron apoptotic process  
Ontology : EGO-EBImicrotubule cytoskeleton organization  inner cell mass cell proliferation  trophectodermal cell proliferation  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  mRNA processing  signal transduction  zinc ion binding  cell proliferation  RNA splicing  positive regulation of gene expression  Cajal body  spinal cord development  axon  axon  growth cone  Cajal body organization  Cajal body organization  receptor tyrosine kinase binding  translation initiation factor binding  regulation of myelination  SMN complex  positive regulation of RNA splicing  DNA endoreduplication  positive regulation of protein import into nucleus  neuronal cell body  perikaryon  positive regulation of growth  perinuclear region of cytoplasm  axon development  axon development  cellular response to epidermal growth factor stimulus  positive regulation of transcription involved in G1/S transition of mitotic cell cycle  Gemini of coiled bodies  apoptotic process involved in development  pre-mRNA catabolic process  negative regulation of motor neuron apoptotic process  
NDEx NetworkZPR1
Atlas of Cancer Signalling NetworkZPR1
Wikipedia pathwaysZPR1
Orthology - Evolution
OrthoDB8882
GeneTree (enSembl)ENSG00000109917
Phylogenetic Trees/Animal Genes : TreeFamZPR1
HOVERGENO75312
HOGENOMO75312
Homologs : HomoloGeneZPR1
Homology/Alignments : Family Browser (UCSC)ZPR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZPR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZPR1
dbVarZPR1
ClinVarZPR1
1000_GenomesZPR1 
Exome Variant ServerZPR1
ExAC (Exome Aggregation Consortium)ZPR1 (select the gene name)
Genetic variants : HAPMAP8882
Genomic Variants (DGV)ZPR1 [DGVbeta]
DECIPHER (Syndromes)11:116648905-116658754  ENSG00000109917
CONAN: Copy Number AnalysisZPR1 
Mutations
ICGC Data PortalZPR1 
TCGA Data PortalZPR1 
Broad Tumor PortalZPR1
OASIS PortalZPR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZPR1
BioMutasearch ZPR1
DgiDB (Drug Gene Interaction Database)ZPR1
DoCM (Curated mutations)ZPR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZPR1 (select a term)
intoGenZPR1
Cancer3DZPR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603901   
Orphanet
MedgenZPR1
Genetic Testing Registry ZPR1
NextProtO75312 [Medical]
TSGene8882
GENETestsZPR1
Huge Navigator ZPR1 [HugePedia]
snp3D : Map Gene to Disease8882
BioCentury BCIQZPR1
ClinGenZPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8882
Chemical/Pharm GKB GenePA37629
Clinical trialZPR1
Miscellaneous
canSAR (ICR)ZPR1 (select the gene name)
Probes
Litterature
PubMed55 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZPR1
EVEXZPR1
GoPubMedZPR1
iHOPZPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:57 CEST 2017

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