Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZRANB1 (zinc finger, RAN-binding domain containing 1)

Identity

Other namesTRABID
HGNC (Hugo) ZRANB1
LocusID (NCBI) 54764
Location 10q26.13
Location_base_pair Starts at 126630692 and ends at 126676005 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZRANB1   18224
Entrez_Gene (NCBI)ZRANB1  54764  zinc finger, RAN-binding domain containing 1
Cards
GeneCards (Weizmann)ZRANB1
Ensembl (Hinxton)ENSG00000019995 [Gene_View]  chr10:126630692-126676005 [Contig_View]  ZRANB1 [Vega]
AceView (NCBI)ZRANB1
Genatlas (Paris)ZRANB1
SOURCE (Stanford)NM_017580
Genomic and cartography
GoldenPath (UCSC)ZRANB1  -  10q26.13   chr10:126630692-126676005 +  10q26.13   [Description]    (hg19-Feb_2009)
EnsemblZRANB1 - 10q26.13 [CytoView]
Mapping of homologs : NCBIZRANB1 [Mapview]
OMIM611749   
Gene and transcription
Genbank (Entrez)AJ252060 AK302810 AK307386 AL832925 BC048281
RefSeq transcript (SRS)NM_017580
RefSeq transcript (Entrez)NM_017580
RefSeq genomic (SRS)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838010 NW_004078068
RefSeq genomic (Entrez)AC_000142 NC_000010 NC_018921 NT_030059 NW_001838010 NW_004078068
Consensus coding sequences : CCDS (NCBI)ZRANB1
Cluster EST : UnigeneHs.595158 [ SRS ] Hs.595158 [ NCBI ]
CGAP (NCI)Hs.595158
Alternative Splicing : Fast-db (Paris)GSHG0003763
Alternative Splicing GalleryENSG00000019995
Gene ExpressionZRANB1 [ NCBI-GEO ]   ZRANB1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGI0 (SRS) Q9UGI0 (Uniprot)
NextProtQ9UGI0
With graphics : InterProQ9UGI0
Splice isoforms : SwissVarQ9UGI0(Swissvar)
Domaine pattern : Prosite (SRS)ANK_REPEAT (PS50088)    OTU (PS50802)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domaine pattern : Prosite (Expaxy)ANK_REPEAT (PS50088)    OTU (PS50802)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domains : Interpro (SRS)OTU    Znf_RanBP2   
Domains : Interpro (EBI)OTU    Znf_RanBP2   
Related proteins : CluSTrQ9UGI0
Domain families : Pfam (SRS)OTU (PF02338)    zf-RanBP (PF00641)   
Domain families : Pfam (Sanger)OTU (PF02338)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam02338    pfam00641   
Domain families : Smart (EMBL)ZnF_RBZ (SM00547)  
DMDM54764
Blocks (Seattle)Q9UGI0
PDB (SRS)3ZRH   
PDB (PDBSum)3ZRH   
PDB (IMB)3ZRH   
PDB (RSDB)3ZRH   
Human Protein AtlasENSG00000019995
HPRD11738
IPIIPI00005347   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGI0
IntAct (EBI)Q9UGI0
FunCoupENSG00000019995
REACTOMEZRANB1
Protein Interaction Database54764
BioGRIDZRANB1
InParanoidQ9UGI0
Interologous Interaction database Q9UGI0
IntegromeDBZRANB1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZRANB1
SNP (GeneSNP Utah)ZRANB1
SNP : HGBaseZRANB1
Genetic variants : HAPMAPZRANB1
Somatic Mutations in Cancer : COSMICZRANB1 
CONAN: Copy Number AnalysisZRANB1 
Mutations and Diseases : HGMDZRANB1
OMIM611749   
GENETests611749   
Disease Genetic AssociationZRANB1
Huge Navigator ZRANB1 [HugePedia]  ZRANB1 [HugeCancerGEM]
Genomic VariantsZRANB1  ZRANB1 [DGVbeta]
ClinVarZRANB1
snp3D : Map Gene to Disease54764
General knowledge
Homologs : HomoloGeneZRANB1
Homology/Alignments : Family Browser (UCSC)ZRANB1
Phylogenetic Trees/Animal Genes : TreeFamZRANB1
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.12 [ Enzyme-SRS ]   3.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
Chemical/Protein Interactions : CTD54764
Chemical/Pharm GKB GenePA134933584
Clinical trialZRANB1
Cancer Resource (Charite)ENSG00000019995
Ontology : AmiGOubiquitin thiolesterase activity  ubiquitin-specific protease activity  protein binding  nucleus  cytoplasm  cytoskeleton organization  zinc ion binding  Wnt receptor signaling pathway  cell migration  regulation of cell morphogenesis  positive regulation of Wnt receptor signaling pathway  K63-linked polyubiquitin binding  protein K63-linked deubiquitination  protein deubiquitination involved in ubiquitin-dependent protein catabolic process  
Ontology : EGO-EBIubiquitin thiolesterase activity  ubiquitin-specific protease activity  protein binding  nucleus  cytoplasm  cytoskeleton organization  zinc ion binding  Wnt receptor signaling pathway  cell migration  regulation of cell morphogenesis  positive regulation of Wnt receptor signaling pathway  K63-linked polyubiquitin binding  protein K63-linked deubiquitination  protein deubiquitination involved in ubiquitin-dependent protein catabolic process  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneZRANB1
iHOPZRANB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:39:21 CEST 2013
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