Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZRANB1 (zinc finger RANBP2-type containing 1)

Identity

Alias_nameszinc finger
Alias_symbol (synonym)TRABID
Other alias
HGNC (Hugo) ZRANB1
LocusID (NCBI) 54764
Atlas_Id 43561
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 126630692 and ends at 126676005 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ATE1 (10q26.13) / ZRANB1 (10q26.13)PDLIM5 (4q22.3) / ZRANB1 (10q26.13)ZRANB1 (10q26.13) / HSPA9 (5q31.2)
ZRANB1 (10q26.13) / ZDHHC20 (13q12.11)ZRANB1 (10q26.13) / ZRANB1 (10q26.13)ATE1 10q26.13 / ZRANB1 10q26.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZRANB1   18224
Cards
Entrez_Gene (NCBI)ZRANB1  54764  zinc finger RANBP2-type containing 1
AliasesTRABID
GeneCards (Weizmann)ZRANB1
Ensembl hg19 (Hinxton)ENSG00000019995 [Gene_View]  chr10:126630692-126676005 [Contig_View]  ZRANB1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000019995 [Gene_View]  chr10:126630692-126676005 [Contig_View]  ZRANB1 [Vega]
ICGC DataPortalENSG00000019995
TCGA cBioPortalZRANB1
AceView (NCBI)ZRANB1
Genatlas (Paris)ZRANB1
WikiGenes54764
SOURCE (Princeton)ZRANB1
Genetics Home Reference (NIH)ZRANB1
Genomic and cartography
GoldenPath hg19 (UCSC)ZRANB1  -     chr10:126630692-126676005 +  10q26.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZRANB1  -     10q26.13   [Description]    (hg38-Dec_2013)
EnsemblZRANB1 - 10q26.13 [CytoView hg19]  ZRANB1 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIZRANB1 [Mapview hg19]  ZRANB1 [Mapview hg38]
OMIM611749   
Gene and transcription
Genbank (Entrez)AJ252060 AK302810 AK307386 AL832925 BC048281
RefSeq transcript (Entrez)NM_017580
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)ZRANB1
Cluster EST : UnigeneHs.595158 [ NCBI ]
CGAP (NCI)Hs.595158
Alternative Splicing GalleryENSG00000019995
Gene ExpressionZRANB1 [ NCBI-GEO ]   ZRANB1 [ EBI - ARRAY_EXPRESS ]   ZRANB1 [ SEEK ]   ZRANB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZRANB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54764
GTEX Portal (Tissue expression)ZRANB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UGI0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UGI0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UGI0
Splice isoforms : SwissVarQ9UGI0
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ9UGI0
Domaine pattern : Prosite (Expaxy)OTU (PS50802)    ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domains : Interpro (EBI)OTU_dom    Znf_RanBP2   
Domain families : Pfam (Sanger)OTU (PF02338)    zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam02338    pfam00641   
Domain families : Smart (EMBL)ZnF_RBZ (SM00547)  
Conserved Domain (NCBI)ZRANB1
DMDM Disease mutations54764
Blocks (Seattle)ZRANB1
PDB (SRS)3ZRH    5AF6   
PDB (PDBSum)3ZRH    5AF6   
PDB (IMB)3ZRH    5AF6   
PDB (RSDB)3ZRH    5AF6   
Structural Biology KnowledgeBase3ZRH    5AF6   
SCOP (Structural Classification of Proteins)3ZRH    5AF6   
CATH (Classification of proteins structures)3ZRH    5AF6   
SuperfamilyQ9UGI0
Human Protein AtlasENSG00000019995
Peptide AtlasQ9UGI0
HPRD11738
IPIIPI00005347   
Protein Interaction databases
DIP (DOE-UCLA)Q9UGI0
IntAct (EBI)Q9UGI0
FunCoupENSG00000019995
BioGRIDZRANB1
STRING (EMBL)ZRANB1
ZODIACZRANB1
Ontologies - Pathways
QuickGOQ9UGI0
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoskeleton organization  zinc ion binding  Wnt signaling pathway  cell migration  regulation of cell morphogenesis  positive regulation of Wnt signaling pathway  protein K29-linked deubiquitination  K63-linked polyubiquitin binding  protein K63-linked deubiquitination  protein K63-linked deubiquitination  protein deubiquitination involved in ubiquitin-dependent protein catabolic process  protein K33-linked deubiquitination  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  protein binding  nucleus  nucleoplasm  cytoplasm  cytoskeleton organization  zinc ion binding  Wnt signaling pathway  cell migration  regulation of cell morphogenesis  positive regulation of Wnt signaling pathway  protein K29-linked deubiquitination  K63-linked polyubiquitin binding  protein K63-linked deubiquitination  protein K63-linked deubiquitination  protein deubiquitination involved in ubiquitin-dependent protein catabolic process  protein K33-linked deubiquitination  
NDEx NetworkZRANB1
Atlas of Cancer Signalling NetworkZRANB1
Wikipedia pathwaysZRANB1
Orthology - Evolution
OrthoDB54764
GeneTree (enSembl)ENSG00000019995
Phylogenetic Trees/Animal Genes : TreeFamZRANB1
HOVERGENQ9UGI0
HOGENOMQ9UGI0
Homologs : HomoloGeneZRANB1
Homology/Alignments : Family Browser (UCSC)ZRANB1
Gene fusions - Rearrangements
Fusion : MitelmanATE1/ZRANB1 [10q26.13/10q26.13]  [t(10;10)(q26;q26)]  
Fusion: TCGAATE1 10q26.13 ZRANB1 10q26.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZRANB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZRANB1
dbVarZRANB1
ClinVarZRANB1
1000_GenomesZRANB1 
Exome Variant ServerZRANB1
ExAC (Exome Aggregation Consortium)ZRANB1 (select the gene name)
Genetic variants : HAPMAP54764
Genomic Variants (DGV)ZRANB1 [DGVbeta]
DECIPHER (Syndromes)10:126630692-126676005  ENSG00000019995
CONAN: Copy Number AnalysisZRANB1 
Mutations
ICGC Data PortalZRANB1 
TCGA Data PortalZRANB1 
Broad Tumor PortalZRANB1
OASIS PortalZRANB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZRANB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZRANB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZRANB1
DgiDB (Drug Gene Interaction Database)ZRANB1
DoCM (Curated mutations)ZRANB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZRANB1 (select a term)
intoGenZRANB1
Cancer3DZRANB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611749   
Orphanet
MedgenZRANB1
Genetic Testing Registry ZRANB1
NextProtQ9UGI0 [Medical]
TSGene54764
GENETestsZRANB1
Huge Navigator ZRANB1 [HugePedia]
snp3D : Map Gene to Disease54764
BioCentury BCIQZRANB1
ClinGenZRANB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54764
Chemical/Pharm GKB GenePA134933584
Clinical trialZRANB1
Miscellaneous
canSAR (ICR)ZRANB1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZRANB1
EVEXZRANB1
GoPubMedZRANB1
iHOPZRANB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:35:18 CET 2017

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