Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZRANB2 (zinc finger RANBP2-type containing 2)

Identity

Alias_namesZNF265
zinc finger protein 265
zinc finger, RAN-binding domain containing 2
Alias_symbol (synonym)ZIS
ZIS1
ZIS2
Other alias
HGNC (Hugo) ZRANB2
LocusID (NCBI) 9406
Atlas_Id 53842
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 71063291 and ends at 71081289 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NEGR1 (1p31.1) / ZRANB2 (1p31.1)NEGR1 1p31.1 / ZRANB2 1p31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZRANB2   13058
Cards
Entrez_Gene (NCBI)ZRANB2  9406  zinc finger RANBP2-type containing 2
AliasesZIS; ZIS1; ZIS2; ZNF265
GeneCards (Weizmann)ZRANB2
Ensembl hg19 (Hinxton)ENSG00000132485 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132485 [Gene_View]  chr1:71063291-71081289 [Contig_View]  ZRANB2 [Vega]
ICGC DataPortalENSG00000132485
TCGA cBioPortalZRANB2
AceView (NCBI)ZRANB2
Genatlas (Paris)ZRANB2
WikiGenes9406
SOURCE (Princeton)ZRANB2
Genetics Home Reference (NIH)ZRANB2
Genomic and cartography
GoldenPath hg38 (UCSC)ZRANB2  -     chr1:71063291-71081289 -  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZRANB2  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblZRANB2 - 1p31.1 [CytoView hg19]  ZRANB2 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIZRANB2 [Mapview hg19]  ZRANB2 [Mapview hg38]
OMIM604347   
Gene and transcription
Genbank (Entrez)AB209568 AF065391 AF065392 AK023252 AK055983
RefSeq transcript (Entrez)NM_005455 NM_203350
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZRANB2
Cluster EST : UnigeneHs.194718 [ NCBI ]
CGAP (NCI)Hs.194718
Alternative Splicing GalleryENSG00000132485
Gene ExpressionZRANB2 [ NCBI-GEO ]   ZRANB2 [ EBI - ARRAY_EXPRESS ]   ZRANB2 [ SEEK ]   ZRANB2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZRANB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9406
GTEX Portal (Tissue expression)ZRANB2
Human Protein AtlasENSG00000132485-ZRANB2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95218   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95218  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95218
Splice isoforms : SwissVarO95218
PhosPhoSitePlusO95218
Domaine pattern : Prosite (Expaxy)ZF_RANBP2_1 (PS01358)    ZF_RANBP2_2 (PS50199)   
Domains : Interpro (EBI)UCP037956_Znf_RanB2    Znf_RanBP2   
Domain families : Pfam (Sanger)zf-RanBP (PF00641)   
Domain families : Pfam (NCBI)pfam00641   
Domain families : Smart (EMBL)ZnF_RBZ (SM00547)  
Conserved Domain (NCBI)ZRANB2
DMDM Disease mutations9406
Blocks (Seattle)ZRANB2
PDB (SRS)1N0Z    2K1P    3G9Y   
PDB (PDBSum)1N0Z    2K1P    3G9Y   
PDB (IMB)1N0Z    2K1P    3G9Y   
PDB (RSDB)1N0Z    2K1P    3G9Y   
Structural Biology KnowledgeBase1N0Z    2K1P    3G9Y   
SCOP (Structural Classification of Proteins)1N0Z    2K1P    3G9Y   
CATH (Classification of proteins structures)1N0Z    2K1P    3G9Y   
SuperfamilyO95218
Human Protein Atlas [tissue]ENSG00000132485-ZRANB2 [tissue]
Peptide AtlasO95218
HPRD09185
IPIIPI00029400   IPI00219866   IPI00845348   
Protein Interaction databases
DIP (DOE-UCLA)O95218
IntAct (EBI)O95218
FunCoupENSG00000132485
BioGRIDZRANB2
STRING (EMBL)ZRANB2
ZODIACZRANB2
Ontologies - Pathways
QuickGOO95218
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  mRNA processing  zinc ion binding  RNA splicing  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  RNA binding  protein binding  nucleus  nucleoplasm  regulation of transcription, DNA-templated  mRNA processing  zinc ion binding  RNA splicing  
NDEx NetworkZRANB2
Atlas of Cancer Signalling NetworkZRANB2
Wikipedia pathwaysZRANB2
Orthology - Evolution
OrthoDB9406
GeneTree (enSembl)ENSG00000132485
Phylogenetic Trees/Animal Genes : TreeFamZRANB2
HOVERGENO95218
HOGENOMO95218
Homologs : HomoloGeneZRANB2
Homology/Alignments : Family Browser (UCSC)ZRANB2
Gene fusions - Rearrangements
Fusion : MitelmanNEGR1/ZRANB2 [1p31.1/1p31.1]  [t(1;1)(p31;p31)]  
Fusion: TCGA_MDACCNEGR1 1p31.1 ZRANB2 1p31.1 GBM
Tumor Fusion PortalZRANB2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZRANB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZRANB2
dbVarZRANB2
ClinVarZRANB2
1000_GenomesZRANB2 
Exome Variant ServerZRANB2
ExAC (Exome Aggregation Consortium)ENSG00000132485
GNOMAD BrowserENSG00000132485
Genetic variants : HAPMAP9406
Genomic Variants (DGV)ZRANB2 [DGVbeta]
DECIPHERZRANB2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZRANB2 
Mutations
ICGC Data PortalZRANB2 
TCGA Data PortalZRANB2 
Broad Tumor PortalZRANB2
OASIS PortalZRANB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZRANB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZRANB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZRANB2
DgiDB (Drug Gene Interaction Database)ZRANB2
DoCM (Curated mutations)ZRANB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZRANB2 (select a term)
intoGenZRANB2
Cancer3DZRANB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604347   
Orphanet
DisGeNETZRANB2
MedgenZRANB2
Genetic Testing Registry ZRANB2
NextProtO95218 [Medical]
TSGene9406
GENETestsZRANB2
Target ValidationZRANB2
Huge Navigator ZRANB2 [HugePedia]
snp3D : Map Gene to Disease9406
BioCentury BCIQZRANB2
ClinGenZRANB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9406
Chemical/Pharm GKB GenePA37636
Clinical trialZRANB2
Miscellaneous
canSAR (ICR)ZRANB2 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZRANB2
EVEXZRANB2
GoPubMedZRANB2
iHOPZRANB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:42:48 CET 2017

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