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ZRSR1 (zinc finger CCCH-type, RNA binding motif and serine/arginine rich 1)

Identity

Alias_namesU2AFBPL
U2AF1P
U2AF1L1
U2(RNU2) small nuclear RNA auxiliary factor binding protein-like
U2 small nuclear RNA auxillary factor 1-like 1
Alias_symbol (synonym)U2AF1-RS1
U2AF1RS1
ZC3H21
Other alias
HGNC (Hugo) ZRSR1
LocusID (NCBI) 7310
Atlas_Id 42740
Location 5q22.2  [Link to chromosome band 5q22]
Location_base_pair Starts at 112891612 and ends at 112893134 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZRSR1   12456
Cards
Entrez_Gene (NCBI)ZRSR1  7310  zinc finger CCCH-type, RNA binding motif and serine/arginine rich 1
AliasesU2AF1-RS1; U2AF1L1; U2AF1P; U2AF1RS1; 
U2AFBPL; ZC3H21
GeneCards (Weizmann)ZRSR1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:112891612-112893134 [Contig_View]  ZRSR1 [Vega]
TCGA cBioPortalZRSR1
AceView (NCBI)ZRSR1
Genatlas (Paris)ZRSR1
WikiGenes7310
SOURCE (Princeton)ZRSR1
Genetics Home Reference (NIH)ZRSR1
Genomic and cartography
GoldenPath hg38 (UCSC)ZRSR1  -     chr5:112891612-112893134 +  5q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZRSR1  -     5q22.2   [Description]    (hg19-Feb_2009)
EnsemblZRSR1 - 5q22.2 [CytoView hg19]  ZRSR1 - 5q22.2 [CytoView hg38]
Mapping of homologs : NCBIZRSR1 [Mapview hg19]  ZRSR1 [Mapview hg38]
OMIM601079   
Gene and transcription
Genbank (Entrez)BC104811 BC113599 D49676
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZRSR1
Cluster EST : UnigeneHs.637001 [ NCBI ]
CGAP (NCI)Hs.637001
Gene ExpressionZRSR1 [ NCBI-GEO ]   ZRSR1 [ EBI - ARRAY_EXPRESS ]   ZRSR1 [ SEEK ]   ZRSR1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZRSR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7310
GTEX Portal (Tissue expression)ZRSR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15695   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15695  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15695
Splice isoforms : SwissVarQ15695
PhosPhoSitePlusQ15695
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    RRM_dom_euk    U2AF_small    Znf_CCCH   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00076    pfam00642   
Domain families : Smart (EMBL)RRM_1 (SM00361)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZRSR1
DMDM Disease mutations7310
Blocks (Seattle)ZRSR1
SuperfamilyQ15695
Peptide AtlasQ15695
HPRD03049
IPIIPI00018952   
Protein Interaction databases
DIP (DOE-UCLA)Q15695
IntAct (EBI)Q15695
BioGRIDZRSR1
STRING (EMBL)ZRSR1
ZODIACZRSR1
Ontologies - Pathways
QuickGOQ15695
Ontology : AmiGOmRNA splicing, via spliceosome  spliceosomal complex  biological_process  pre-mRNA 3'-splice site binding  metal ion binding  U2AF  
Ontology : EGO-EBImRNA splicing, via spliceosome  spliceosomal complex  biological_process  pre-mRNA 3'-splice site binding  metal ion binding  U2AF  
NDEx NetworkZRSR1
Atlas of Cancer Signalling NetworkZRSR1
Wikipedia pathwaysZRSR1
Orthology - Evolution
OrthoDB7310
Phylogenetic Trees/Animal Genes : TreeFamZRSR1
HOVERGENQ15695
HOGENOMQ15695
Homologs : HomoloGeneZRSR1
Homology/Alignments : Family Browser (UCSC)ZRSR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZRSR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZRSR1
dbVarZRSR1
ClinVarZRSR1
1000_GenomesZRSR1 
Exome Variant ServerZRSR1
ExAC (Exome Aggregation Consortium)ZRSR1 (select the gene name)
Genetic variants : HAPMAP7310
Genomic Variants (DGV)ZRSR1 [DGVbeta]
DECIPHERZRSR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZRSR1 
Mutations
ICGC Data PortalZRSR1 
TCGA Data PortalZRSR1 
Broad Tumor PortalZRSR1
OASIS PortalZRSR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZRSR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZRSR1
BioMutasearch ZRSR1
DgiDB (Drug Gene Interaction Database)ZRSR1
DoCM (Curated mutations)ZRSR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZRSR1 (select a term)
intoGenZRSR1
Cancer3DZRSR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601079   
Orphanet
MedgenZRSR1
Genetic Testing Registry ZRSR1
NextProtQ15695 [Medical]
TSGene7310
GENETestsZRSR1
Target ValidationZRSR1
Huge Navigator ZRSR1 [HugePedia]
snp3D : Map Gene to Disease7310
BioCentury BCIQZRSR1
ClinGenZRSR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7310
Chemical/Pharm GKB GenePA37106
Clinical trialZRSR1
Miscellaneous
canSAR (ICR)ZRSR1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZRSR1
EVEXZRSR1
GoPubMedZRSR1
iHOPZRSR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:04:01 CEST 2017

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