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ZRSR2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2)

Identity

Other namesU2AF1-RS2
U2AF1L2
U2AF1RS2
URP
HGNC (Hugo) ZRSR2
LocusID (NCBI) 8233
Location Xp22.2
Location_base_pair Starts at 15808574 and ends at 15841382 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ZRSR2   23019
Entrez_Gene (NCBI)ZRSR2  8233  zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2
Cards
GeneCards (Weizmann)ZRSR2
Ensembl (Hinxton)ENSG00000169249 [Gene_View]  chrX:15808574-15841382 [Contig_View]  ZRSR2 [Vega]
AceView (NCBI)ZRSR2
Genatlas (Paris)ZRSR2
SOURCE (Stanford)NM_005089
Genomic and cartography
GoldenPath (UCSC)ZRSR2  -  Xp22.2   chrX:15808574-15841382 +  Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblZRSR2 - Xp22.2 [CytoView]
Mapping of homologs : NCBIZRSR2 [Mapview]
OMIM300028   
Gene and transcription
Genbank (Entrez)AK090845 AK309673 BC050451 BC065719 BC113454
RefSeq transcript (SRS)NM_005089
RefSeq transcript (Entrez)NM_005089
RefSeq genomic (SRS)AC_000155 NC_000023 NC_018934 NG_012746 NT_167197 NW_001842360 NW_004078118
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_012746 NT_167197 NW_001842360 NW_004078118
Consensus coding sequences : CCDS (NCBI)ZRSR2
Cluster EST : UnigeneHs.171909 [ SRS ] Hs.171909 [ NCBI ]
CGAP (NCI)Hs.171909
Alternative Splicing : Fast-db (Paris)GSHG0031396
Alternative Splicing GalleryENSG00000169249
Gene ExpressionZRSR2 [ NCBI-GEO ]   ZRSR2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15696 (SRS) Q15696 (Uniprot)
NextProtQ15696
With graphics : InterProQ15696
Splice isoforms : SwissVarQ15696(Swissvar)
Domaine pattern : Prosite (SRS)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (SRS)Nucleotide-bd_a/b_plait    RRM_dom    U2_small    Znf_CCCH   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    U2_small    Znf_CCCH   
Related proteins : CluSTrQ15696
Domain families : Pfam (SRS)zf-CCCH (PF00642)   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00642   
Domain families : Smart (EMBL)RRM (SM00360)  ZnF_C3H1 (SM00356)  
DMDM8233
Blocks (Seattle)Q15696
Human Protein AtlasENSG00000169249
HPRD02068
IPIIPI00018954   IPI00639872   
Protein Interaction databases
DIP (DOE-UCLA)Q15696
IntAct (EBI)Q15696
FunCoupENSG00000169249
REACTOMEZRSR2
Protein Interaction Database8233
BioGRIDZRSR2
InParanoidQ15696
Interologous Interaction database Q15696
IntegromeDBZRSR2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZRSR2
SNP (GeneSNP Utah)ZRSR2
SNP : HGBaseZRSR2
Genetic variants : HAPMAPZRSR2
Cancer Gene: CensusZRSR2 
Somatic Mutations in Cancer : COSMICZRSR2 
CONAN: Copy Number AnalysisZRSR2 
Mutations and Diseases : HGMDZRSR2
OMIM300028   
GENETests300028   
Disease Genetic AssociationZRSR2
Huge Navigator ZRSR2 [HugePedia]  ZRSR2 [HugeCancerGEM]
Genomic VariantsZRSR2  ZRSR2 [DGVbeta]
snp3D : Map Gene to Disease8233
General knowledge
Homologs : HomoloGeneZRSR2
Homology/Alignments : Family Browser (UCSC)ZRSR2
Phylogenetic Trees/Animal Genes : TreeFamZRSR2
Chemical/Protein Interactions : CTD8233
Chemical/Pharm GKB GenePA162410930
Clinical trialZRSR2
Cancer Resource (Charite)ENSG00000169249
Ontology : AmiGOnucleotide binding  spliceosomal complex assembly  mRNA splicing, via spliceosome  protein binding  U12-type spliceosomal complex  zinc ion binding  RNA splicing  pre-mRNA 3'-splice site binding  metal ion binding  
Ontology : EGO-EBInucleotide binding  spliceosomal complex assembly  mRNA splicing, via spliceosome  protein binding  U12-type spliceosomal complex  zinc ion binding  RNA splicing  pre-mRNA 3'-splice site binding  metal ion binding  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneZRSR2
iHOPZRSR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:20:29 CEST 2013
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