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ZRSR2P1 (ZRSR2 pseudogene 1)

Identity

Other aliasU2AF1-RS1
U2AF1L1
U2AF1P
U2AF1RS1
U2AFBPL
ZC3H21
ZRSR1
HGNC (Hugo) ZRSR2P1
LocusID (NCBI) 7310
Atlas_Id 57303
Location 5q22.2  [Link to chromosome band 5q22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ZRSR2P1   12456
Cards
Entrez_Gene (NCBI)ZRSR2P1  7310  ZRSR2 pseudogene 1
AliasesU2AF1-RS1; U2AF1L1; U2AF1P; U2AF1RS1; 
U2AFBPL; ZC3H21; ZRSR1
GeneCards (Weizmann)ZRSR2P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  ZRSR2P1 [Vega]
TCGA cBioPortalZRSR2P1
AceView (NCBI)ZRSR2P1
Genatlas (Paris)ZRSR2P1
WikiGenes7310
SOURCE (Princeton)ZRSR2P1
Genetics Home Reference (NIH)ZRSR2P1
Genomic and cartography
GoldenPath hg38 (UCSC)ZRSR2P1  -  
GoldenPath hg19 (UCSC)ZRSR2P1  -  
EnsemblZRSR2P1 - [CytoView hg19]  ZRSR2P1 - [CytoView hg38]
Mapping of homologs : NCBIZRSR2P1 [Mapview hg19]  ZRSR2P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC104811 BC113599 D49676
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZRSR2P1
Cluster EST : UnigeneHs.637001 [ NCBI ]
CGAP (NCI)Hs.637001
Gene ExpressionZRSR2P1 [ NCBI-GEO ]   ZRSR2P1 [ EBI - ARRAY_EXPRESS ]   ZRSR2P1 [ SEEK ]   ZRSR2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZRSR2P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7310
GTEX Portal (Tissue expression)ZRSR2P1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15695   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15695  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15695
Splice isoforms : SwissVarQ15695
PhosPhoSitePlusQ15695
Domaine pattern : Prosite (Expaxy)RRM (PS50102)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    RRM_dom_euk    U2AF_small    Znf_CCCH   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-CCCH (PF00642)   
Domain families : Pfam (NCBI)pfam00076    pfam00642   
Domain families : Smart (EMBL)RRM_1 (SM00361)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZRSR2P1
DMDM Disease mutations7310
Blocks (Seattle)ZRSR2P1
SuperfamilyQ15695
Peptide AtlasQ15695
IPIIPI00018952   
Protein Interaction databases
DIP (DOE-UCLA)Q15695
IntAct (EBI)Q15695
BioGRIDZRSR2P1
STRING (EMBL)ZRSR2P1
ZODIACZRSR2P1
Ontologies - Pathways
QuickGOQ15695
Ontology : AmiGOmRNA splicing, via spliceosome  spliceosomal complex  biological_process  pre-mRNA 3'-splice site binding  metal ion binding  U2AF  
Ontology : EGO-EBImRNA splicing, via spliceosome  spliceosomal complex  biological_process  pre-mRNA 3'-splice site binding  metal ion binding  U2AF  
NDEx NetworkZRSR2P1
Atlas of Cancer Signalling NetworkZRSR2P1
Wikipedia pathwaysZRSR2P1
Orthology - Evolution
OrthoDB7310
Phylogenetic Trees/Animal Genes : TreeFamZRSR2P1
HOVERGENQ15695
HOGENOMQ15695
Homologs : HomoloGeneZRSR2P1
Homology/Alignments : Family Browser (UCSC)ZRSR2P1
Gene fusions - Rearrangements
Fusion : QuiverZRSR2P1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZRSR2P1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZRSR2P1
dbVarZRSR2P1
ClinVarZRSR2P1
1000_GenomesZRSR2P1 
Exome Variant ServerZRSR2P1
Varsome BrowserZRSR2P1
Genetic variants : HAPMAP7310
Genomic Variants (DGV)ZRSR2P1 [DGVbeta]
DECIPHERZRSR2P1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZRSR2P1 
Mutations
ICGC Data PortalZRSR2P1 
TCGA Data PortalZRSR2P1 
Broad Tumor PortalZRSR2P1
OASIS PortalZRSR2P1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZRSR2P1
BioMutasearch ZRSR2P1
DgiDB (Drug Gene Interaction Database)ZRSR2P1
DoCM (Curated mutations)ZRSR2P1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZRSR2P1 (select a term)
intoGenZRSR2P1
Cancer3DZRSR2P1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZRSR2P1
MedgenZRSR2P1
Genetic Testing Registry ZRSR2P1
NextProtQ15695 [Medical]
TSGene7310
GENETestsZRSR2P1
Target ValidationZRSR2P1
Huge Navigator ZRSR2P1 [HugePedia]
snp3D : Map Gene to Disease7310
BioCentury BCIQZRSR2P1
ClinGenZRSR2P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7310
Chemical/Pharm GKB GenePA37106
Clinical trialZRSR2P1
Miscellaneous
canSAR (ICR)ZRSR2P1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZRSR2P1
EVEXZRSR2P1
GoPubMedZRSR2P1
iHOPZRSR2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:51:54 CET 2018

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