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ZSCAN1 (zinc finger and SCAN domain containing 1)

Identity

Alias_nameszinc finger with SCAN domain 1
Alias_symbol (synonym)FLJ33779
ZNF915
Other aliasMZF-1
HGNC (Hugo) ZSCAN1
LocusID (NCBI) 284312
Atlas_Id 76485
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58034066 and ends at 58054631 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN1   23712
Cards
Entrez_Gene (NCBI)ZSCAN1  284312  zinc finger and SCAN domain containing 1
AliasesMZF-1; ZNF915
GeneCards (Weizmann)ZSCAN1
Ensembl hg19 (Hinxton)ENSG00000152467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152467 [Gene_View]  chr19:58034066-58054631 [Contig_View]  ZSCAN1 [Vega]
ICGC DataPortalENSG00000152467
TCGA cBioPortalZSCAN1
AceView (NCBI)ZSCAN1
Genatlas (Paris)ZSCAN1
WikiGenes284312
SOURCE (Princeton)ZSCAN1
Genetics Home Reference (NIH)ZSCAN1
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN1  -     chr19:58034066-58054631 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN1  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZSCAN1 - 19q13.43 [CytoView hg19]  ZSCAN1 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZSCAN1 [Mapview hg19]  ZSCAN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091098 AY280370 BC048099 BC107729 DQ597428
RefSeq transcript (Entrez)NM_182572
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN1
Cluster EST : UnigeneHs.643437 [ NCBI ]
CGAP (NCI)Hs.643437
Alternative Splicing GalleryENSG00000152467
Gene ExpressionZSCAN1 [ NCBI-GEO ]   ZSCAN1 [ EBI - ARRAY_EXPRESS ]   ZSCAN1 [ SEEK ]   ZSCAN1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284312
GTEX Portal (Tissue expression)ZSCAN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBB4
Splice isoforms : SwissVarQ8NBB4
PhosPhoSitePlusQ8NBB4
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN1
DMDM Disease mutations284312
Blocks (Seattle)ZSCAN1
SuperfamilyQ8NBB4
Human Protein AtlasENSG00000152467
Peptide AtlasQ8NBB4
HPRD15897
IPIIPI00301010   IPI00448936   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBB4
IntAct (EBI)Q8NBB4
FunCoupENSG00000152467
BioGRIDZSCAN1
STRING (EMBL)ZSCAN1
ZODIACZSCAN1
Ontologies - Pathways
QuickGOQ8NBB4
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN1
Atlas of Cancer Signalling NetworkZSCAN1
Wikipedia pathwaysZSCAN1
Orthology - Evolution
OrthoDB284312
GeneTree (enSembl)ENSG00000152467
Phylogenetic Trees/Animal Genes : TreeFamZSCAN1
HOVERGENQ8NBB4
HOGENOMQ8NBB4
Homologs : HomoloGeneZSCAN1
Homology/Alignments : Family Browser (UCSC)ZSCAN1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN1
dbVarZSCAN1
ClinVarZSCAN1
1000_GenomesZSCAN1 
Exome Variant ServerZSCAN1
ExAC (Exome Aggregation Consortium)ZSCAN1 (select the gene name)
Genetic variants : HAPMAP284312
Genomic Variants (DGV)ZSCAN1 [DGVbeta]
DECIPHERZSCAN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN1 
Mutations
ICGC Data PortalZSCAN1 
TCGA Data PortalZSCAN1 
Broad Tumor PortalZSCAN1
OASIS PortalZSCAN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN1
DgiDB (Drug Gene Interaction Database)ZSCAN1
DoCM (Curated mutations)ZSCAN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN1 (select a term)
intoGenZSCAN1
Cancer3DZSCAN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZSCAN1
Genetic Testing Registry ZSCAN1
NextProtQ8NBB4 [Medical]
TSGene284312
GENETestsZSCAN1
Target ValidationZSCAN1
Huge Navigator ZSCAN1 [HugePedia]
snp3D : Map Gene to Disease284312
BioCentury BCIQZSCAN1
ClinGenZSCAN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284312
Chemical/Pharm GKB GenePA134933489
Clinical trialZSCAN1
Miscellaneous
canSAR (ICR)ZSCAN1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN1
EVEXZSCAN1
GoPubMedZSCAN1
iHOPZSCAN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:32 CEST 2017

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