Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZSCAN10 (zinc finger and SCAN domain containing 10)

Identity

Alias_namesZNF206
zinc finger protein 206
Other alias
HGNC (Hugo) ZSCAN10
LocusID (NCBI) 84891
Atlas_Id 56045
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 3088891 and ends at 3099317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZSCAN10   12997
Cards
Entrez_Gene (NCBI)ZSCAN10  84891  zinc finger and SCAN domain containing 10
AliasesZNF206
GeneCards (Weizmann)ZSCAN10
Ensembl hg19 (Hinxton)ENSG00000130182 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130182 [Gene_View]  ENSG00000130182 [Sequence]  chr16:3088891-3099317 [Contig_View]  ZSCAN10 [Vega]
ICGC DataPortalENSG00000130182
TCGA cBioPortalZSCAN10
AceView (NCBI)ZSCAN10
Genatlas (Paris)ZSCAN10
WikiGenes84891
SOURCE (Princeton)ZSCAN10
Genetics Home Reference (NIH)ZSCAN10
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN10  -     chr16:3088891-3099317 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN10  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZSCAN10 - 16p13.3 [CytoView hg19]  ZSCAN10 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZSCAN10 [Mapview hg19]  ZSCAN10 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027455 AK074736 BC111367 BC114452 CN366927
RefSeq transcript (Entrez)NM_001282415 NM_001282416 NM_001365272 NM_001365273 NM_032805
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN10
Cluster EST : UnigeneHs.334515 [ NCBI ]
CGAP (NCI)Hs.334515
Alternative Splicing GalleryENSG00000130182
Gene ExpressionZSCAN10 [ NCBI-GEO ]   ZSCAN10 [ EBI - ARRAY_EXPRESS ]   ZSCAN10 [ SEEK ]   ZSCAN10 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84891
GTEX Portal (Tissue expression)ZSCAN10
Human Protein AtlasENSG00000130182-ZSCAN10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96SZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96SZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96SZ4
Splice isoforms : SwissVarQ96SZ4
PhosPhoSitePlusQ96SZ4
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN10
DMDM Disease mutations84891
Blocks (Seattle)ZSCAN10
SuperfamilyQ96SZ4
Human Protein Atlas [tissue]ENSG00000130182-ZSCAN10 [tissue]
Peptide AtlasQ96SZ4
HPRD15747
IPIIPI00045938   IPI00967302   
Protein Interaction databases
DIP (DOE-UCLA)Q96SZ4
IntAct (EBI)Q96SZ4
FunCoupENSG00000130182
BioGRIDZSCAN10
STRING (EMBL)ZSCAN10
ZODIACZSCAN10
Ontologies - Pathways
QuickGOQ96SZ4
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  DNA-binding transcription factor activity  nucleus  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  somatic stem cell population maintenance  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription factor activity  DNA-binding transcription factor activity  nucleus  nucleus  nucleoplasm  regulation of transcription by RNA polymerase II  somatic stem cell population maintenance  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN10
Atlas of Cancer Signalling NetworkZSCAN10
Wikipedia pathwaysZSCAN10
Orthology - Evolution
OrthoDB84891
GeneTree (enSembl)ENSG00000130182
Phylogenetic Trees/Animal Genes : TreeFamZSCAN10
HOVERGENQ96SZ4
HOGENOMQ96SZ4
Homologs : HomoloGeneZSCAN10
Homology/Alignments : Family Browser (UCSC)ZSCAN10
Gene fusions - Rearrangements
Fusion : QuiverZSCAN10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN10
dbVarZSCAN10
ClinVarZSCAN10
1000_GenomesZSCAN10 
Exome Variant ServerZSCAN10
ExAC (Exome Aggregation Consortium)ENSG00000130182
GNOMAD BrowserENSG00000130182
Varsome BrowserZSCAN10
Genetic variants : HAPMAP84891
Genomic Variants (DGV)ZSCAN10 [DGVbeta]
DECIPHERZSCAN10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN10 
Mutations
ICGC Data PortalZSCAN10 
TCGA Data PortalZSCAN10 
Broad Tumor PortalZSCAN10
OASIS PortalZSCAN10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN10
DgiDB (Drug Gene Interaction Database)ZSCAN10
DoCM (Curated mutations)ZSCAN10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN10 (select a term)
intoGenZSCAN10
Cancer3DZSCAN10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN10
MedgenZSCAN10
Genetic Testing Registry ZSCAN10
NextProtQ96SZ4 [Medical]
TSGene84891
GENETestsZSCAN10
Target ValidationZSCAN10
Huge Navigator ZSCAN10 [HugePedia]
snp3D : Map Gene to Disease84891
BioCentury BCIQZSCAN10
ClinGenZSCAN10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84891
Chemical/Pharm GKB GenePA162410957
Clinical trialZSCAN10
Miscellaneous
canSAR (ICR)ZSCAN10 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN10
EVEXZSCAN10
GoPubMedZSCAN10
iHOPZSCAN10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:51:54 CET 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.