Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZSCAN12 (zinc finger and SCAN domain containing 12)

Identity

Alias (NCBI)ZFP96
ZNF29K1
ZNF305
ZNF96
dJ29K1.2
HGNC (Hugo) ZSCAN12
HGNC Alias symbKIAA0426
ZNF29K1
ZFP96
dJ29K1.2
HGNC Previous nameZNF305
 ZNF96
HGNC Previous namezinc finger protein 305
 zinc finger protein 96
LocusID (NCBI) 9753
Atlas_Id 76487
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28388950 and ends at 28399767 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FN1 (2q35) / ZSCAN12 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ZSCAN12   13172
Cards
Entrez_Gene (NCBI)ZSCAN12    zinc finger and SCAN domain containing 12
AliasesZFP96; ZNF29K1; ZNF305; ZNF96; 
dJ29K1.2
GeneCards (Weizmann)ZSCAN12
Ensembl hg19 (Hinxton)ENSG00000158691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158691 [Gene_View]  ENSG00000158691 [Sequence]  chr6:28388950-28399767 [Contig_View]  ZSCAN12 [Vega]
ICGC DataPortalENSG00000158691
TCGA cBioPortalZSCAN12
AceView (NCBI)ZSCAN12
Genatlas (Paris)ZSCAN12
SOURCE (Princeton)ZSCAN12
Genetics Home Reference (NIH)ZSCAN12
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN12  -     chr6:28388950-28399767 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN12  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathZSCAN12 - 6p22.1 [CytoView hg19]  ZSCAN12 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000158691
genome Data Viewer NCBIZSCAN12 [Mapview hg19]  
OMIM603978   
Gene and transcription
Genbank (Entrez)AB007886 AK289802 AL602228 BC041661 BF091581
RefSeq transcript (Entrez)NM_001039643 NM_001163391 NM_001368124 NM_014724
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN12
Alternative Splicing GalleryENSG00000158691
Gene ExpressionZSCAN12 [ NCBI-GEO ]   ZSCAN12 [ EBI - ARRAY_EXPRESS ]   ZSCAN12 [ SEEK ]   ZSCAN12 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN12 [ Firebrowse - Broad ]
GenevisibleExpression of ZSCAN12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9753
GTEX Portal (Tissue expression)ZSCAN12
Human Protein AtlasENSG00000158691-ZSCAN12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43309   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43309  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43309
Splice isoforms : SwissVarO43309
PhosPhoSitePlusO43309
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN12
Blocks (Seattle)ZSCAN12
SuperfamilyO43309
Human Protein Atlas [tissue]ENSG00000158691-ZSCAN12 [tissue]
Peptide AtlasO43309
HPRD15767
IPIIPI00011942   
Protein Interaction databases
DIP (DOE-UCLA)O43309
IntAct (EBI)O43309
BioGRIDZSCAN12
STRING (EMBL)ZSCAN12
ZODIACZSCAN12
Ontologies - Pathways
QuickGOO43309
Ontology : AmiGODNA binding  DNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  DNA-binding transcription factor activity  protein binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN12
Atlas of Cancer Signalling NetworkZSCAN12
Wikipedia pathwaysZSCAN12
Orthology - Evolution
OrthoDB9753
GeneTree (enSembl)ENSG00000158691
Phylogenetic Trees/Animal Genes : TreeFamZSCAN12
HOGENOMO43309
Homologs : HomoloGeneZSCAN12
Homology/Alignments : Family Browser (UCSC)ZSCAN12
Gene fusions - Rearrangements
Fusion : QuiverZSCAN12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN12 [hg38]
dbVarZSCAN12
ClinVarZSCAN12
MonarchZSCAN12
1000_GenomesZSCAN12 
Exome Variant ServerZSCAN12
GNOMAD BrowserENSG00000158691
Varsome BrowserZSCAN12
Genomic Variants (DGV)ZSCAN12 [DGVbeta]
DECIPHERZSCAN12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN12 
Mutations
ICGC Data PortalZSCAN12 
TCGA Data PortalZSCAN12 
Broad Tumor PortalZSCAN12
OASIS PortalZSCAN12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN12  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZSCAN12
Mutations and Diseases : HGMDZSCAN12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN12
DgiDB (Drug Gene Interaction Database)ZSCAN12
DoCM (Curated mutations)ZSCAN12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN12 (select a term)
intoGenZSCAN12
Cancer3DZSCAN12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603978   
Orphanet
DisGeNETZSCAN12
MedgenZSCAN12
Genetic Testing Registry ZSCAN12
NextProtO43309 [Medical]
GENETestsZSCAN12
Target ValidationZSCAN12
Huge Navigator ZSCAN12 [HugePedia]
ClinGenZSCAN12
Clinical trials, drugs, therapy
MyCancerGenomeZSCAN12
Protein Interactions : CTD
Pharm GKB GenePA37744
Clinical trialZSCAN12
Miscellaneous
canSAR (ICR)ZSCAN12 (select the gene name)
HarmonizomeZSCAN12
DataMed IndexZSCAN12
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN12
EVEXZSCAN12
GoPubMedZSCAN12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:37:10 CET 2020

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