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ZSCAN12 (zinc finger and SCAN domain containing 12)

Identity

Alias_namesZNF305
ZNF96
zinc finger protein 305
zinc finger protein 96
Alias_symbol (synonym)KIAA0426
ZNF29K1
ZFP96
dJ29K1.2
Other alias
HGNC (Hugo) ZSCAN12
LocusID (NCBI) 9753
Atlas_Id 76487
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28388950 and ends at 28399767 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FN1 (2q35) / ZSCAN12 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN12   13172
Cards
Entrez_Gene (NCBI)ZSCAN12  9753  zinc finger and SCAN domain containing 12
AliasesZFP96; ZNF29K1; ZNF305; ZNF96; 
dJ29K1.2
GeneCards (Weizmann)ZSCAN12
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:28388950-28399767 [Contig_View]  ZSCAN12 [Vega]
TCGA cBioPortalZSCAN12
AceView (NCBI)ZSCAN12
Genatlas (Paris)ZSCAN12
WikiGenes9753
SOURCE (Princeton)ZSCAN12
Genetics Home Reference (NIH)ZSCAN12
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN12  -     chr6:28388950-28399767 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN12  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN12 - 6p22.1 [CytoView hg19]  ZSCAN12 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN12 [Mapview hg19]  ZSCAN12 [Mapview hg38]
OMIM603978   
Gene and transcription
Genbank (Entrez)AB007886 AK289802 AL602228 BC041661 BF091581
RefSeq transcript (Entrez)NM_001039643 NM_001163391 NM_014724
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN12
Cluster EST : UnigeneHs.134816 [ NCBI ]
CGAP (NCI)Hs.134816
Gene ExpressionZSCAN12 [ NCBI-GEO ]   ZSCAN12 [ EBI - ARRAY_EXPRESS ]   ZSCAN12 [ SEEK ]   ZSCAN12 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9753
GTEX Portal (Tissue expression)ZSCAN12
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43309   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43309  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43309
Splice isoforms : SwissVarO43309
PhosPhoSitePlusO43309
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN12
DMDM Disease mutations9753
Blocks (Seattle)ZSCAN12
SuperfamilyO43309
Peptide AtlasO43309
HPRD15767
IPIIPI00011942   
Protein Interaction databases
DIP (DOE-UCLA)O43309
IntAct (EBI)O43309
BioGRIDZSCAN12
STRING (EMBL)ZSCAN12
ZODIACZSCAN12
Ontologies - Pathways
QuickGOO43309
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN12
Atlas of Cancer Signalling NetworkZSCAN12
Wikipedia pathwaysZSCAN12
Orthology - Evolution
OrthoDB9753
Phylogenetic Trees/Animal Genes : TreeFamZSCAN12
HOVERGENO43309
HOGENOMO43309
Homologs : HomoloGeneZSCAN12
Homology/Alignments : Family Browser (UCSC)ZSCAN12
Gene fusions - Rearrangements
Fusion : QuiverZSCAN12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN12
dbVarZSCAN12
ClinVarZSCAN12
1000_GenomesZSCAN12 
Exome Variant ServerZSCAN12
Varsome BrowserZSCAN12
Genetic variants : HAPMAP9753
Genomic Variants (DGV)ZSCAN12 [DGVbeta]
DECIPHERZSCAN12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN12 
Mutations
ICGC Data PortalZSCAN12 
TCGA Data PortalZSCAN12 
Broad Tumor PortalZSCAN12
OASIS PortalZSCAN12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN12
DgiDB (Drug Gene Interaction Database)ZSCAN12
DoCM (Curated mutations)ZSCAN12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN12 (select a term)
intoGenZSCAN12
Cancer3DZSCAN12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603978   
Orphanet
DisGeNETZSCAN12
MedgenZSCAN12
Genetic Testing Registry ZSCAN12
NextProtO43309 [Medical]
TSGene9753
GENETestsZSCAN12
Target ValidationZSCAN12
Huge Navigator ZSCAN12 [HugePedia]
snp3D : Map Gene to Disease9753
BioCentury BCIQZSCAN12
ClinGenZSCAN12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9753
Chemical/Pharm GKB GenePA37744
Clinical trialZSCAN12
Miscellaneous
canSAR (ICR)ZSCAN12 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN12
EVEXZSCAN12
GoPubMedZSCAN12
iHOPZSCAN12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:40:59 CEST 2018

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