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ZSCAN16-AS1 (ZSCAN16 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) ZSCAN16-AS1
LocusID (NCBI) 100129195
Atlas_Id 76490
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28121795 and ends at 28137316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN16-AS1   48982
Cards
Entrez_Gene (NCBI)ZSCAN16-AS1  100129195  ZSCAN16 antisense RNA 1
Aliases
GeneCards (Weizmann)ZSCAN16-AS1
Ensembl hg19 (Hinxton)ENSG00000269293 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269293 [Gene_View]  ENSG00000269293 [Sequence]  chr6:28121795-28137316 [Contig_View]  ZSCAN16-AS1 [Vega]
ICGC DataPortalENSG00000269293
TCGA cBioPortalZSCAN16-AS1
AceView (NCBI)ZSCAN16-AS1
Genatlas (Paris)ZSCAN16-AS1
WikiGenes100129195
SOURCE (Princeton)ZSCAN16-AS1
Genetics Home Reference (NIH)ZSCAN16-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN16-AS1  -     chr6:28121795-28137316 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN16-AS1  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN16-AS1 - 6p22.1 [CytoView hg19]  ZSCAN16-AS1 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN16-AS1 [Mapview hg19]  ZSCAN16-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127889 AK309286 BC043177 HY052668
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN16-AS1
Cluster EST : UnigeneHs.659413 [ NCBI ]
CGAP (NCI)Hs.659413
Alternative Splicing GalleryENSG00000269293
Gene ExpressionZSCAN16-AS1 [ NCBI-GEO ]   ZSCAN16-AS1 [ EBI - ARRAY_EXPRESS ]   ZSCAN16-AS1 [ SEEK ]   ZSCAN16-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN16-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100129195
GTEX Portal (Tissue expression)ZSCAN16-AS1
Human Protein AtlasENSG00000269293-ZSCAN16-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZSCAN16-AS1
DMDM Disease mutations100129195
Blocks (Seattle)ZSCAN16-AS1
Human Protein Atlas [tissue]ENSG00000269293-ZSCAN16-AS1 [tissue]
IPIIPI00444230   
Protein Interaction databases
FunCoupENSG00000269293
BioGRIDZSCAN16-AS1
STRING (EMBL)ZSCAN16-AS1
ZODIACZSCAN16-AS1
Ontologies - Pathways
Huge Navigator ZSCAN16-AS1 [HugePedia]
snp3D : Map Gene to Disease100129195
BioCentury BCIQZSCAN16-AS1
ClinGenZSCAN16-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100129195
Clinical trialZSCAN16-AS1
Miscellaneous
canSAR (ICR)ZSCAN16-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN16-AS1
EVEXZSCAN16-AS1
GoPubMedZSCAN16-AS1
iHOPZSCAN16-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:00 CEST 2018

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