Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZSCAN16 (zinc finger and SCAN domain containing 16)

Identity

Alias_namesZNF392
ZNF435
zinc finger protein 392
zinc finger protein 435
Alias_symbol (synonym)FLJ22191
dJ265C24.3
Other alias
HGNC (Hugo) ZSCAN16
LocusID (NCBI) 80345
Atlas_Id 76489
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28124556 and ends at 28130086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN16   20813
Cards
Entrez_Gene (NCBI)ZSCAN16  80345  zinc finger and SCAN domain containing 16
AliasesZNF392; ZNF435; dJ265C24.3
GeneCards (Weizmann)ZSCAN16
Ensembl hg19 (Hinxton)ENSG00000196812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196812 [Gene_View]  ENSG00000196812 [Sequence]  chr6:28124556-28130086 [Contig_View]  ZSCAN16 [Vega]
ICGC DataPortalENSG00000196812
TCGA cBioPortalZSCAN16
AceView (NCBI)ZSCAN16
Genatlas (Paris)ZSCAN16
WikiGenes80345
SOURCE (Princeton)ZSCAN16
Genetics Home Reference (NIH)ZSCAN16
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN16  -     chr6:28124556-28130086 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN16  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN16 - 6p22.1 [CytoView hg19]  ZSCAN16 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN16 [Mapview hg19]  ZSCAN16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025844 AK294017 AK309837 BC004255 CA306342
RefSeq transcript (Entrez)NM_001320555 NM_001320556 NM_001320557 NM_001320558 NM_025231
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN16
Cluster EST : UnigeneHs.656641 [ NCBI ]
CGAP (NCI)Hs.656641
Alternative Splicing GalleryENSG00000196812
Gene ExpressionZSCAN16 [ NCBI-GEO ]   ZSCAN16 [ EBI - ARRAY_EXPRESS ]   ZSCAN16 [ SEEK ]   ZSCAN16 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80345
GTEX Portal (Tissue expression)ZSCAN16
Human Protein AtlasENSG00000196812-ZSCAN16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4T2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4T2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4T2
Splice isoforms : SwissVarQ9H4T2
PhosPhoSitePlusQ9H4T2
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN16
DMDM Disease mutations80345
Blocks (Seattle)ZSCAN16
PDB (SRS)2COT   
PDB (PDBSum)2COT   
PDB (IMB)2COT   
PDB (RSDB)2COT   
Structural Biology KnowledgeBase2COT   
SCOP (Structural Classification of Proteins)2COT   
CATH (Classification of proteins structures)2COT   
SuperfamilyQ9H4T2
Human Protein Atlas [tissue]ENSG00000196812-ZSCAN16 [tissue]
Peptide AtlasQ9H4T2
HPRD15792
IPIIPI00058574   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4T2
IntAct (EBI)Q9H4T2
FunCoupENSG00000196812
BioGRIDZSCAN16
STRING (EMBL)ZSCAN16
ZODIACZSCAN16
Ontologies - Pathways
QuickGOQ9H4T2
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN16
Atlas of Cancer Signalling NetworkZSCAN16
Wikipedia pathwaysZSCAN16
Orthology - Evolution
OrthoDB80345
GeneTree (enSembl)ENSG00000196812
Phylogenetic Trees/Animal Genes : TreeFamZSCAN16
HOVERGENQ9H4T2
HOGENOMQ9H4T2
Homologs : HomoloGeneZSCAN16
Homology/Alignments : Family Browser (UCSC)ZSCAN16
Gene fusions - Rearrangements
Fusion : QuiverZSCAN16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN16
dbVarZSCAN16
ClinVarZSCAN16
1000_GenomesZSCAN16 
Exome Variant ServerZSCAN16
ExAC (Exome Aggregation Consortium)ENSG00000196812
GNOMAD BrowserENSG00000196812
Varsome BrowserZSCAN16
Genetic variants : HAPMAP80345
Genomic Variants (DGV)ZSCAN16 [DGVbeta]
DECIPHERZSCAN16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN16 
Mutations
ICGC Data PortalZSCAN16 
TCGA Data PortalZSCAN16 
Broad Tumor PortalZSCAN16
OASIS PortalZSCAN16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN16
DgiDB (Drug Gene Interaction Database)ZSCAN16
DoCM (Curated mutations)ZSCAN16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN16 (select a term)
intoGenZSCAN16
Cancer3DZSCAN16(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN16
MedgenZSCAN16
Genetic Testing Registry ZSCAN16
NextProtQ9H4T2 [Medical]
TSGene80345
GENETestsZSCAN16
Target ValidationZSCAN16
Huge Navigator ZSCAN16 [HugePedia]
snp3D : Map Gene to Disease80345
BioCentury BCIQZSCAN16
ClinGenZSCAN16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80345
Chemical/Pharm GKB GenePA162410958
Clinical trialZSCAN16
Miscellaneous
canSAR (ICR)ZSCAN16 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN16
EVEXZSCAN16
GoPubMedZSCAN16
iHOPZSCAN16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:00 CEST 2018

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