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ZSCAN18 (zinc finger and SCAN domain containing 18)

Identity

Alias_namesZNF447
zinc finger protein 447
Alias_symbol (synonym)FLJ12895
Other alias
HGNC (Hugo) ZSCAN18
LocusID (NCBI) 65982
Atlas_Id 55097
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58083842 and ends at 58118426 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CHAMP1 (13q34) / ZSCAN18 (19q13.43)ZNF606 (19q13.43) / ZSCAN18 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN18   21037
Cards
Entrez_Gene (NCBI)ZSCAN18  65982  zinc finger and SCAN domain containing 18
AliasesZNF447
GeneCards (Weizmann)ZSCAN18
Ensembl hg19 (Hinxton)ENSG00000121413 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121413 [Gene_View]  chr19:58083842-58118426 [Contig_View]  ZSCAN18 [Vega]
ICGC DataPortalENSG00000121413
TCGA cBioPortalZSCAN18
AceView (NCBI)ZSCAN18
Genatlas (Paris)ZSCAN18
WikiGenes65982
SOURCE (Princeton)ZSCAN18
Genetics Home Reference (NIH)ZSCAN18
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN18  -     chr19:58083842-58118426 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN18  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZSCAN18 - 19q13.43 [CytoView hg19]  ZSCAN18 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZSCAN18 [Mapview hg19]  ZSCAN18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022957 AK096238 AK126140 AK160376 AK225548
RefSeq transcript (Entrez)NM_001145542 NM_001145543 NM_001145544 NM_023926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN18
Cluster EST : UnigeneHs.235390 [ NCBI ]
CGAP (NCI)Hs.235390
Alternative Splicing GalleryENSG00000121413
Gene ExpressionZSCAN18 [ NCBI-GEO ]   ZSCAN18 [ EBI - ARRAY_EXPRESS ]   ZSCAN18 [ SEEK ]   ZSCAN18 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65982
GTEX Portal (Tissue expression)ZSCAN18
Human Protein AtlasENSG00000121413-ZSCAN18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBC5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBC5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBC5
Splice isoforms : SwissVarQ8TBC5
PhosPhoSitePlusQ8TBC5
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam02023   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN18
DMDM Disease mutations65982
Blocks (Seattle)ZSCAN18
SuperfamilyQ8TBC5
Human Protein Atlas [tissue]ENSG00000121413-ZSCAN18 [tissue]
Peptide AtlasQ8TBC5
HPRD07802
IPIIPI00154608   IPI00645438   IPI00441971   IPI00923494   IPI01018232   IPI00929242   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBC5
IntAct (EBI)Q8TBC5
FunCoupENSG00000121413
BioGRIDZSCAN18
STRING (EMBL)ZSCAN18
ZODIACZSCAN18
Ontologies - Pathways
QuickGOQ8TBC5
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZSCAN18
Atlas of Cancer Signalling NetworkZSCAN18
Wikipedia pathwaysZSCAN18
Orthology - Evolution
OrthoDB65982
GeneTree (enSembl)ENSG00000121413
Phylogenetic Trees/Animal Genes : TreeFamZSCAN18
HOVERGENQ8TBC5
HOGENOMQ8TBC5
Homologs : HomoloGeneZSCAN18
Homology/Alignments : Family Browser (UCSC)ZSCAN18
Gene fusions - Rearrangements
Tumor Fusion PortalZSCAN18
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN18
dbVarZSCAN18
ClinVarZSCAN18
1000_GenomesZSCAN18 
Exome Variant ServerZSCAN18
ExAC (Exome Aggregation Consortium)ENSG00000121413
GNOMAD BrowserENSG00000121413
Genetic variants : HAPMAP65982
Genomic Variants (DGV)ZSCAN18 [DGVbeta]
DECIPHERZSCAN18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN18 
Mutations
ICGC Data PortalZSCAN18 
TCGA Data PortalZSCAN18 
Broad Tumor PortalZSCAN18
OASIS PortalZSCAN18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN18
DgiDB (Drug Gene Interaction Database)ZSCAN18
DoCM (Curated mutations)ZSCAN18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN18 (select a term)
intoGenZSCAN18
Cancer3DZSCAN18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN18
MedgenZSCAN18
Genetic Testing Registry ZSCAN18
NextProtQ8TBC5 [Medical]
TSGene65982
GENETestsZSCAN18
Target ValidationZSCAN18
Huge Navigator ZSCAN18 [HugePedia]
snp3D : Map Gene to Disease65982
BioCentury BCIQZSCAN18
ClinGenZSCAN18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65982
Chemical/Pharm GKB GenePA162410959
Clinical trialZSCAN18
Miscellaneous
canSAR (ICR)ZSCAN18 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN18
EVEXZSCAN18
GoPubMedZSCAN18
iHOPZSCAN18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:42:49 CET 2017

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