| Nomenclature |
|---|
| HGNC (Hugo) | ZSCAN2 20994 |
| Cards |
|---|
| Entrez_Gene (NCBI) | ZSCAN2 54993 zinc finger and SCAN domain containing 2 |
| Aliases | ZFP29; ZNF854 |
| GeneCards (Weizmann) | ZSCAN2 |
| Ensembl hg19 (Hinxton) | ENSG00000176371 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000176371 [Gene_View] chr15:84601018-84616610 [Contig_View] ZSCAN2 [Vega] |
| ICGC DataPortal | ENSG00000176371 |
| TCGA cBioPortal | ZSCAN2 |
| AceView (NCBI) | ZSCAN2 |
| Genatlas (Paris) | ZSCAN2 |
| WikiGenes | 54993 |
| SOURCE (Princeton) | ZSCAN2 |
| Genetics Home Reference (NIH) | ZSCAN2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | ZSCAN2 - chr15:84601018-84616610 + 15q25.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | ZSCAN2 - 15q25.2 [Description] (hg19-Feb_2009) |
| Ensembl | ZSCAN2 - 15q25.2 [CytoView hg19] ZSCAN2 - 15q25.2 [CytoView hg38] |
| Mapping of homologs : NCBI | ZSCAN2 [Mapview hg19] ZSCAN2 [Mapview hg38] |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK000602 AK128624 AK131309 AK291224 AW452266 |
| RefSeq transcript (Entrez) | NM_001007072 NM_017894 NM_181877 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | ZSCAN2 |
| Cluster EST : Unigene | Hs.594023 [ NCBI ] |
| CGAP (NCI) | Hs.594023 |
| Alternative Splicing Gallery | ENSG00000176371 |
| Gene Expression | ZSCAN2 [ NCBI-GEO ] ZSCAN2 [ EBI - ARRAY_EXPRESS ]
ZSCAN2 [ SEEK ] ZSCAN2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | ZSCAN2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevisible | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 54993 |
| GTEX Portal (Tissue expression) | ZSCAN2 |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q7Z7L9 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q7Z7L9 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q7Z7L9 |
| Splice isoforms : SwissVar | Q7Z7L9 |
| PhosPhoSitePlus | Q7Z7L9 |
| Domaine pattern : Prosite (Expaxy) | SCAN_BOX (PS50804) ZINC_FINGER_C2H2_1 (PS00028) ZINC_FINGER_C2H2_2 (PS50157) |
| Domains : Interpro (EBI) | Retrov_capsid_C SCAN_dom Znf_C2H2 Znf_C2H2-like Znf_C2H2/integrase_DNA-bd |
| Domain families : Pfam (Sanger) | SCAN (PF02023) zf-C2H2 (PF00096) zf-C2H2_6 (PF13912) |
| Domain families : Pfam (NCBI) | pfam02023 pfam00096 pfam13912 |
| Domain families : Smart (EMBL) | SCAN (SM00431) ZnF_C2H2 (SM00355) |
| Conserved Domain (NCBI) | ZSCAN2 |
| DMDM Disease mutations | 54993 |
| Blocks (Seattle) | ZSCAN2 |
| Superfamily | Q7Z7L9 |
| Human Protein Atlas | ENSG00000176371 |
| Peptide Atlas | Q7Z7L9 |
| HPRD | 15898 |
| IPI | IPI00743333 IPI00016630 IPI00479987 IPI00386943 IPI00477202 IPI01011663 IPI01012503 IPI01013484 IPI01013945 IPI00922062 IPI00922133 IPI01014899 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q7Z7L9 |
| IntAct (EBI) | Q7Z7L9 |
| FunCoup | ENSG00000176371 |
| BioGRID | ZSCAN2 |
| STRING (EMBL) | ZSCAN2 |
| ZODIAC | ZSCAN2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q7Z7L9 |
| Ontology : AmiGO | DNA binding transcription factor activity, sequence-specific DNA binding nucleus transcription, DNA-templated regulation of transcription, DNA-templated multicellular organism development spermatogenesis cell differentiation metal ion binding |
| Ontology : EGO-EBI | DNA binding transcription factor activity, sequence-specific DNA binding nucleus transcription, DNA-templated regulation of transcription, DNA-templated multicellular organism development spermatogenesis cell differentiation metal ion binding |
| NDEx Network | ZSCAN2 |
| Atlas of Cancer Signalling Network | ZSCAN2 |
| Wikipedia pathways | ZSCAN2 |
| Orthology - Evolution |
|---|
| OrthoDB | 54993 |
| GeneTree (enSembl) | ENSG00000176371 |
| Phylogenetic Trees/Animal Genes : TreeFam | ZSCAN2 |
| HOVERGEN | Q7Z7L9 |
| HOGENOM | Q7Z7L9 |
| Homologs : HomoloGene | ZSCAN2 |
| Homology/Alignments : Family Browser (UCSC) | ZSCAN2 |
| Gene fusions - Rearrangements |
|---|
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | ZSCAN2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | ZSCAN2 |
| dbVar | ZSCAN2 |
| ClinVar | ZSCAN2 |
| 1000_Genomes | ZSCAN2 |
| Exome Variant Server | ZSCAN2 |
| ExAC (Exome Aggregation Consortium) | ZSCAN2 (select the gene name) |
| Genetic variants : HAPMAP | 54993 |
| Genomic Variants (DGV) | ZSCAN2 [DGVbeta] |
| DECIPHER | ZSCAN2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | ZSCAN2 |
| Mutations |
|---|
| ICGC Data Portal | ZSCAN2 |
| TCGA Data Portal | ZSCAN2 |
| Broad Tumor Portal | ZSCAN2 |
| OASIS Portal | ZSCAN2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | ZSCAN2 [overview] [genome browser] [tissue] [distribution] |
| Mutations and Diseases : HGMD | ZSCAN2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search ZSCAN2 |
| DgiDB (Drug Gene Interaction Database) | ZSCAN2 |
| DoCM (Curated mutations) | ZSCAN2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | ZSCAN2 (select a term) |
| intoGen | ZSCAN2 |
| Cancer3D | ZSCAN2(select the gene name) |
| Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | |
| Orphanet | |
| Medgen | ZSCAN2 |
| Genetic Testing Registry | ZSCAN2
|
| NextProt | Q7Z7L9 [Medical] |
| TSGene | 54993 |
| GENETests | ZSCAN2 |
| Target Validation | ZSCAN2 |
| Huge Navigator |
ZSCAN2 [HugePedia] |
| snp3D : Map Gene to Disease | 54993 |
| BioCentury BCIQ | ZSCAN2 |
| ClinGen | ZSCAN2 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 54993 |
| Chemical/Pharm GKB Gene | PA134941325 |
| Clinical trial | ZSCAN2 |
| Miscellaneous |
|---|
| canSAR (ICR) | ZSCAN2 (select the gene name) |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 10 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | ZSCAN2 |
| EVEX | ZSCAN2 |
| GoPubMed | ZSCAN2 |
| iHOP | ZSCAN2 |
