| Nomenclature |
HGNC (Hugo) | ZSCAN2 20994 |
| Cards |
Entrez_Gene (NCBI) | ZSCAN2 54993 zinc finger and SCAN domain containing 2 |
Aliases | ZFP29; ZNF854 |
GeneCards (Weizmann) | ZSCAN2 |
Ensembl hg19 (Hinxton) | ENSG00000176371 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000176371 [Gene_View] chr15:84601018-84616610 [Contig_View] ZSCAN2 [Vega] |
ICGC DataPortal | ENSG00000176371 |
TCGA cBioPortal | ZSCAN2 |
AceView (NCBI) | ZSCAN2 |
Genatlas (Paris) | ZSCAN2 |
WikiGenes | 54993 |
SOURCE (Princeton) | ZSCAN2 |
Genetics Home Reference (NIH) | ZSCAN2 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | ZSCAN2 - chr15:84601018-84616610 + 15q25.2 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | ZSCAN2 - 15q25.2 [Description] (hg19-Feb_2009) |
Ensembl | ZSCAN2 - 15q25.2 [CytoView hg19] ZSCAN2 - 15q25.2 [CytoView hg38] |
Mapping of homologs : NCBI | ZSCAN2 [Mapview hg19] ZSCAN2 [Mapview hg38] |
| Gene and transcription |
Genbank (Entrez) | AK000602 AK128624 AK131309 AK291224 AW452266 |
RefSeq transcript (Entrez) | NM_001007072 NM_017894 NM_181877 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | ZSCAN2 |
Cluster EST : Unigene | Hs.594023 [ NCBI ] |
CGAP (NCI) | Hs.594023 |
Alternative Splicing Gallery | ENSG00000176371 |
Gene Expression | ZSCAN2 [ NCBI-GEO ] ZSCAN2 [ EBI - ARRAY_EXPRESS ]
ZSCAN2 [ SEEK ] ZSCAN2 [ MEM ] |
Gene Expression Viewer (FireBrowse) | ZSCAN2 [ Firebrowse - Broad ] |
SOURCE (Princeton) | Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60] |
Genevestigator | Expression in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 54993 |
GTEX Portal (Tissue expression) | ZSCAN2 |
Human Protein Atlas | ENSG00000176371-ZSCAN2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | Q7Z7L9 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | Q7Z7L9 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | Q7Z7L9 |
Splice isoforms : SwissVar | Q7Z7L9 |
PhosPhoSitePlus | Q7Z7L9 |
Domaine pattern : Prosite (Expaxy) | SCAN_BOX (PS50804) ZINC_FINGER_C2H2_1 (PS00028) ZINC_FINGER_C2H2_2 (PS50157) |
Domains : Interpro (EBI) | Retrov_capsid_C SCAN_dom Znf_C2H2 Znf_C2H2-like Znf_C2H2/integrase_DNA-bd |
Domain families : Pfam (Sanger) | SCAN (PF02023) zf-C2H2 (PF00096) zf-C2H2_6 (PF13912) |
Domain families : Pfam (NCBI) | pfam02023 pfam00096 pfam13912 |
Domain families : Smart (EMBL) | SCAN (SM00431) ZnF_C2H2 (SM00355) |
Conserved Domain (NCBI) | ZSCAN2 |
DMDM Disease mutations | 54993 |
Blocks (Seattle) | ZSCAN2 |
Superfamily | Q7Z7L9 |
Human Protein Atlas [tissue] | ENSG00000176371-ZSCAN2 [tissue] |
Peptide Atlas | Q7Z7L9 |
HPRD | 15898 |
IPI | IPI00743333 IPI00016630 IPI00479987 IPI00386943 IPI00477202 IPI01011663 IPI01012503 IPI01013484 IPI01013945 IPI00922062 IPI00922133 IPI01014899 |
| Protein Interaction databases |
DIP (DOE-UCLA) | Q7Z7L9 |
IntAct (EBI) | Q7Z7L9 |
FunCoup | ENSG00000176371 |
BioGRID | ZSCAN2 |
STRING (EMBL) | ZSCAN2 |
ZODIAC | ZSCAN2 |
| Ontologies - Pathways |
QuickGO | Q7Z7L9 |
Ontology : AmiGO | DNA binding transcription factor activity, sequence-specific DNA binding nucleus transcription, DNA-templated regulation of transcription, DNA-templated multicellular organism development spermatogenesis cell differentiation metal ion binding |
Ontology : EGO-EBI | DNA binding transcription factor activity, sequence-specific DNA binding nucleus transcription, DNA-templated regulation of transcription, DNA-templated multicellular organism development spermatogenesis cell differentiation metal ion binding |
NDEx Network | ZSCAN2 |
Atlas of Cancer Signalling Network | ZSCAN2 |
Wikipedia pathways | ZSCAN2 |
| Orthology - Evolution |
OrthoDB | 54993 |
GeneTree (enSembl) | ENSG00000176371 |
Phylogenetic Trees/Animal Genes : TreeFam | ZSCAN2 |
HOVERGEN | Q7Z7L9 |
HOGENOM | Q7Z7L9 |
Homologs : HomoloGene | ZSCAN2 |
Homology/Alignments : Family Browser (UCSC) | ZSCAN2 |
| Gene fusions - Rearrangements |
Fusion : Quiver | ZSCAN2 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | ZSCAN2 [hg38] |
dbSNP Single Nucleotide Polymorphism (NCBI) | ZSCAN2 |
dbVar | ZSCAN2 |
ClinVar | ZSCAN2 |
1000_Genomes | ZSCAN2 |
Exome Variant Server | ZSCAN2 |
ExAC (Exome Aggregation Consortium) | ENSG00000176371 |
GNOMAD Browser | ENSG00000176371 |
Genetic variants : HAPMAP | 54993 |
Genomic Variants (DGV) | ZSCAN2 [DGVbeta] |
DECIPHER | ZSCAN2 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | ZSCAN2 |
| Mutations |
ICGC Data Portal | ZSCAN2 |
TCGA Data Portal | ZSCAN2 |
Broad Tumor Portal | ZSCAN2 |
OASIS Portal | ZSCAN2 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | ZSCAN2 [overview] [genome browser] [tissue] [distribution] |
Mutations and Diseases : HGMD | ZSCAN2 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search ZSCAN2 |
DgiDB (Drug Gene Interaction Database) | ZSCAN2 |
DoCM (Curated mutations) | ZSCAN2 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | ZSCAN2 (select a term) |
intoGen | ZSCAN2 |
Cancer3D | ZSCAN2(select the gene name) |
Impact of mutations | [PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
---|
OMIM | |
Orphanet | |
DisGeNET | ZSCAN2 |
Medgen | ZSCAN2 |
Genetic Testing Registry | ZSCAN2
|
NextProt | Q7Z7L9 [Medical] |
TSGene | 54993 |
GENETests | ZSCAN2 |
Target Validation | ZSCAN2 |
Huge Navigator |
ZSCAN2 [HugePedia] |
snp3D : Map Gene to Disease | 54993 |
BioCentury BCIQ | ZSCAN2 |
ClinGen | ZSCAN2 |
| Clinical trials, drugs, therapy |
---|
Chemical/Protein Interactions : CTD | 54993 |
Chemical/Pharm GKB Gene | PA134941325 |
Clinical trial | ZSCAN2 |
| Miscellaneous |
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canSAR (ICR) | ZSCAN2 (select the gene name) |
| Probes |
---|
| Litterature |
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PubMed | 10 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
CoreMine | ZSCAN2 |
EVEX | ZSCAN2 |
GoPubMed | ZSCAN2 |
iHOP | ZSCAN2 |