Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZSCAN2 (zinc finger and SCAN domain containing 2)

Identity

Alias_namesZFP29
zinc finger protein 29
Alias_symbol (synonym)FLJ20595
ZNF854
Other alias
HGNC (Hugo) ZSCAN2
LocusID (NCBI) 54993
Atlas_Id 76492
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 84601018 and ends at 84616610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZSCAN2 (15q25.2) / WDR73 (15q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZSCAN2   20994
Cards
Entrez_Gene (NCBI)ZSCAN2  54993  zinc finger and SCAN domain containing 2
AliasesZFP29; ZNF854
GeneCards (Weizmann)ZSCAN2
Ensembl hg19 (Hinxton)ENSG00000176371 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176371 [Gene_View]  ENSG00000176371 [Sequence]  chr15:84601018-84616610 [Contig_View]  ZSCAN2 [Vega]
ICGC DataPortalENSG00000176371
TCGA cBioPortalZSCAN2
AceView (NCBI)ZSCAN2
Genatlas (Paris)ZSCAN2
WikiGenes54993
SOURCE (Princeton)ZSCAN2
Genetics Home Reference (NIH)ZSCAN2
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN2  -     chr15:84601018-84616610 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN2  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblZSCAN2 - 15q25.2 [CytoView hg19]  ZSCAN2 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIZSCAN2 [Mapview hg19]  ZSCAN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000602 AK128624 AK131309 AK291224 AW452266
RefSeq transcript (Entrez)NM_001007072 NM_017894 NM_181877
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN2
Cluster EST : UnigeneHs.594023 [ NCBI ]
CGAP (NCI)Hs.594023
Alternative Splicing GalleryENSG00000176371
Gene ExpressionZSCAN2 [ NCBI-GEO ]   ZSCAN2 [ EBI - ARRAY_EXPRESS ]   ZSCAN2 [ SEEK ]   ZSCAN2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54993
GTEX Portal (Tissue expression)ZSCAN2
Human Protein AtlasENSG00000176371-ZSCAN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7L9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7L9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7L9
Splice isoforms : SwissVarQ7Z7L9
PhosPhoSitePlusQ7Z7L9
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN2
DMDM Disease mutations54993
Blocks (Seattle)ZSCAN2
SuperfamilyQ7Z7L9
Human Protein Atlas [tissue]ENSG00000176371-ZSCAN2 [tissue]
Peptide AtlasQ7Z7L9
HPRD15898
IPIIPI00743333   IPI00016630   IPI00479987   IPI00386943   IPI00477202   IPI01011663   IPI01012503   IPI01013484   IPI01013945   IPI00922062   IPI00922133   IPI01014899   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7L9
IntAct (EBI)Q7Z7L9
FunCoupENSG00000176371
BioGRIDZSCAN2
STRING (EMBL)ZSCAN2
ZODIACZSCAN2
Ontologies - Pathways
QuickGOQ7Z7L9
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  
NDEx NetworkZSCAN2
Atlas of Cancer Signalling NetworkZSCAN2
Wikipedia pathwaysZSCAN2
Orthology - Evolution
OrthoDB54993
GeneTree (enSembl)ENSG00000176371
Phylogenetic Trees/Animal Genes : TreeFamZSCAN2
HOVERGENQ7Z7L9
HOGENOMQ7Z7L9
Homologs : HomoloGeneZSCAN2
Homology/Alignments : Family Browser (UCSC)ZSCAN2
Gene fusions - Rearrangements
Fusion : QuiverZSCAN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN2
dbVarZSCAN2
ClinVarZSCAN2
1000_GenomesZSCAN2 
Exome Variant ServerZSCAN2
ExAC (Exome Aggregation Consortium)ENSG00000176371
GNOMAD BrowserENSG00000176371
Varsome BrowserZSCAN2
Genetic variants : HAPMAP54993
Genomic Variants (DGV)ZSCAN2 [DGVbeta]
DECIPHERZSCAN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN2 
Mutations
ICGC Data PortalZSCAN2 
TCGA Data PortalZSCAN2 
Broad Tumor PortalZSCAN2
OASIS PortalZSCAN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN2
DgiDB (Drug Gene Interaction Database)ZSCAN2
DoCM (Curated mutations)ZSCAN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN2 (select a term)
intoGenZSCAN2
Cancer3DZSCAN2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZSCAN2
MedgenZSCAN2
Genetic Testing Registry ZSCAN2
NextProtQ7Z7L9 [Medical]
TSGene54993
GENETestsZSCAN2
Target ValidationZSCAN2
Huge Navigator ZSCAN2 [HugePedia]
snp3D : Map Gene to Disease54993
BioCentury BCIQZSCAN2
ClinGenZSCAN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54993
Chemical/Pharm GKB GenePA134941325
Clinical trialZSCAN2
Miscellaneous
canSAR (ICR)ZSCAN2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN2
EVEXZSCAN2
GoPubMedZSCAN2
iHOPZSCAN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:41:00 CEST 2018
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