Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZSCAN20 (zinc finger and SCAN domain containing 20)

Identity

Alias (NCBI)KOX29
ZFP-31
ZNF31
ZNF360
HGNC (Hugo) ZSCAN20
HGNC Alias symbKOX29
HGNC Previous nameZNF360
 ZNF31
HGNC Previous namezinc finger protein 31 (KOX 29)
 zinc finger protein 31
LocusID (NCBI) 7579
Atlas_Id 76493
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33472645 and ends at 33501639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PHC2 (1p35.1) / ZSCAN20 (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZSCAN20   13093
Cards
Entrez_Gene (NCBI)ZSCAN20    zinc finger and SCAN domain containing 20
AliasesKOX29; ZFP-31; ZNF31; ZNF360
GeneCards (Weizmann)ZSCAN20
Ensembl hg19 (Hinxton)ENSG00000121903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121903 [Gene_View]  ENSG00000121903 [Sequence]  chr1:33472645-33501639 [Contig_View]  ZSCAN20 [Vega]
ICGC DataPortalENSG00000121903
TCGA cBioPortalZSCAN20
AceView (NCBI)ZSCAN20
Genatlas (Paris)ZSCAN20
SOURCE (Princeton)ZSCAN20
Genetics Home Reference (NIH)ZSCAN20
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN20  -     chr1:33472645-33501639 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN20  -     1p35.1   [Description]    (hg19-Feb_2009)
GoldenPathZSCAN20 - 1p35.1 [CytoView hg19]  ZSCAN20 - 1p35.1 [CytoView hg38]
ImmunoBaseENSG00000121903
Genome Data Viewer NCBIZSCAN20 [Mapview hg19]  
OMIM611315   
Gene and transcription
Genbank (Entrez)AI651390 AI699720 AK131405 AK290195 BC008827
RefSeq transcript (Entrez)NM_001377376 NM_001377377 NM_001377378 NM_001377379 NM_145238
Consensus coding sequences : CCDS (NCBI)ZSCAN20
Gene ExpressionZSCAN20 [ NCBI-GEO ]   ZSCAN20 [ EBI - ARRAY_EXPRESS ]   ZSCAN20 [ SEEK ]   ZSCAN20 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN20 [ Firebrowse - Broad ]
GenevisibleExpression of ZSCAN20 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7579
GTEX Portal (Tissue expression)ZSCAN20
Human Protein AtlasENSG00000121903-ZSCAN20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17040   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17040  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17040
PhosPhoSitePlusP17040
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)SANT/Myb    SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SANT (SM00717)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN20
SuperfamilyP17040
AlphaFold pdb e-kbP17040   
Human Protein Atlas [tissue]ENSG00000121903-ZSCAN20 [tissue]
HPRD15769
Protein Interaction databases
DIP (DOE-UCLA)P17040
IntAct (EBI)P17040
BioGRIDZSCAN20
STRING (EMBL)ZSCAN20
ZODIACZSCAN20
Ontologies - Pathways
QuickGOP17040
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZSCAN20
Atlas of Cancer Signalling NetworkZSCAN20
Wikipedia pathwaysZSCAN20
Orthology - Evolution
OrthoDB7579
GeneTree (enSembl)ENSG00000121903
Phylogenetic Trees/Animal Genes : TreeFamZSCAN20
Homologs : HomoloGeneZSCAN20
Homology/Alignments : Family Browser (UCSC)ZSCAN20
Gene fusions - Rearrangements
Fusion : QuiverZSCAN20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN20
dbVarZSCAN20
ClinVarZSCAN20
MonarchZSCAN20
1000_GenomesZSCAN20 
Exome Variant ServerZSCAN20
GNOMAD BrowserENSG00000121903
Varsome BrowserZSCAN20
ACMGZSCAN20 variants
VarityP17040
Genomic Variants (DGV)ZSCAN20 [DGVbeta]
DECIPHERZSCAN20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN20 
Mutations
ICGC Data PortalZSCAN20 
TCGA Data PortalZSCAN20 
Broad Tumor PortalZSCAN20
OASIS PortalZSCAN20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZSCAN20
Mutations and Diseases : HGMDZSCAN20
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZSCAN20
DgiDB (Drug Gene Interaction Database)ZSCAN20
DoCM (Curated mutations)ZSCAN20
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN20
Cancer3DZSCAN20
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611315   
Orphanet
DisGeNETZSCAN20
MedgenZSCAN20
Genetic Testing Registry ZSCAN20
NextProtP17040 [Medical]
GENETestsZSCAN20
Target ValidationZSCAN20
Huge Navigator ZSCAN20 [HugePedia]
ClinGenZSCAN20
Clinical trials, drugs, therapy
MyCancerGenomeZSCAN20
Protein Interactions : CTDZSCAN20
Pharm GKB GenePA37668
PharosP17040
Clinical trialZSCAN20
Miscellaneous
canSAR (ICR)ZSCAN20
HarmonizomeZSCAN20
DataMed IndexZSCAN20
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZSCAN20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:30:47 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.