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ZSCAN20 (zinc finger and SCAN domain containing 20)

Identity

Alias_namesZNF360
ZNF31
zinc finger protein 31 (KOX 29)
zinc finger protein 31
Alias_symbol (synonym)KOX29
Other aliasZFP-31
HGNC (Hugo) ZSCAN20
LocusID (NCBI) 7579
Atlas_Id 76493
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33472631 and ends at 33496395 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PHC2 (1p35.1) / ZSCAN20 (1p35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZSCAN20   13093
Cards
Entrez_Gene (NCBI)ZSCAN20  7579  zinc finger and SCAN domain containing 20
AliasesKOX29; ZFP-31; ZNF31; ZNF360
GeneCards (Weizmann)ZSCAN20
Ensembl hg19 (Hinxton)ENSG00000121903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121903 [Gene_View]  chr1:33472631-33496395 [Contig_View]  ZSCAN20 [Vega]
ICGC DataPortalENSG00000121903
TCGA cBioPortalZSCAN20
AceView (NCBI)ZSCAN20
Genatlas (Paris)ZSCAN20
WikiGenes7579
SOURCE (Princeton)ZSCAN20
Genetics Home Reference (NIH)ZSCAN20
Genomic and cartography
GoldenPath hg38 (UCSC)ZSCAN20  -     chr1:33472631-33496395 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZSCAN20  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblZSCAN20 - 1p35.1 [CytoView hg19]  ZSCAN20 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIZSCAN20 [Mapview hg19]  ZSCAN20 [Mapview hg38]
OMIM611315   
Gene and transcription
Genbank (Entrez)AI651390 AI699720 AK131405 AK290195 BC008827
RefSeq transcript (Entrez)NM_145238
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZSCAN20
Cluster EST : UnigeneHs.442705 [ NCBI ]
CGAP (NCI)Hs.442705
Alternative Splicing GalleryENSG00000121903
Gene ExpressionZSCAN20 [ NCBI-GEO ]   ZSCAN20 [ EBI - ARRAY_EXPRESS ]   ZSCAN20 [ SEEK ]   ZSCAN20 [ MEM ]
Gene Expression Viewer (FireBrowse)ZSCAN20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7579
GTEX Portal (Tissue expression)ZSCAN20
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17040   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17040  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17040
Splice isoforms : SwissVarP17040
PhosPhoSitePlusP17040
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SANT/Myb    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SANT (SM00717)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZSCAN20
DMDM Disease mutations7579
Blocks (Seattle)ZSCAN20
SuperfamilyP17040
Human Protein AtlasENSG00000121903
Peptide AtlasP17040
HPRD15769
IPIIPI00418564   IPI00743346   IPI00923544   IPI00420000   
Protein Interaction databases
DIP (DOE-UCLA)P17040
IntAct (EBI)P17040
FunCoupENSG00000121903
BioGRIDZSCAN20
STRING (EMBL)ZSCAN20
ZODIACZSCAN20
Ontologies - Pathways
QuickGOP17040
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZSCAN20
Atlas of Cancer Signalling NetworkZSCAN20
Wikipedia pathwaysZSCAN20
Orthology - Evolution
OrthoDB7579
GeneTree (enSembl)ENSG00000121903
Phylogenetic Trees/Animal Genes : TreeFamZSCAN20
HOVERGENP17040
HOGENOMP17040
Homologs : HomoloGeneZSCAN20
Homology/Alignments : Family Browser (UCSC)ZSCAN20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZSCAN20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZSCAN20
dbVarZSCAN20
ClinVarZSCAN20
1000_GenomesZSCAN20 
Exome Variant ServerZSCAN20
ExAC (Exome Aggregation Consortium)ZSCAN20 (select the gene name)
Genetic variants : HAPMAP7579
Genomic Variants (DGV)ZSCAN20 [DGVbeta]
DECIPHERZSCAN20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZSCAN20 
Mutations
ICGC Data PortalZSCAN20 
TCGA Data PortalZSCAN20 
Broad Tumor PortalZSCAN20
OASIS PortalZSCAN20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZSCAN20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZSCAN20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZSCAN20
DgiDB (Drug Gene Interaction Database)ZSCAN20
DoCM (Curated mutations)ZSCAN20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZSCAN20 (select a term)
intoGenZSCAN20
Cancer3DZSCAN20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611315   
Orphanet
MedgenZSCAN20
Genetic Testing Registry ZSCAN20
NextProtP17040 [Medical]
TSGene7579
GENETestsZSCAN20
Huge Navigator ZSCAN20 [HugePedia]
snp3D : Map Gene to Disease7579
BioCentury BCIQZSCAN20
ClinGenZSCAN20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7579
Chemical/Pharm GKB GenePA37668
Clinical trialZSCAN20
Miscellaneous
canSAR (ICR)ZSCAN20 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZSCAN20
EVEXZSCAN20
GoPubMedZSCAN20
iHOPZSCAN20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:04:11 CEST 2017

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